Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.1958.1	Xcc-8004.1959.1	Xcc-8004.1960.1	Xcc-8004.1961.1	Xcc-8004.1962.1
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-0.6	-2.5	-0.2	-0.3	-4.1
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	+0.2	-0.5	-0.2	-1.4	-4.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	-0.3	+0.2	-4.6	-0.2
carbon source	Citric Acid 10mM (C)	+0.1	+0.7	-0.2	-2.2	-3.0
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	+0.1	-0.6	-0.4	-4.0	+0.3
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	+0.6	+0.4	-0.6	+0.0	-4.7
in planta xylem	Xylemvessel barcodes T0L1P3	+0.4	-0.4	-0.4	-3.7	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.4	-0.1	-0.2	-3.5	+0.0
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	+0.0	-0.4	-0.0	-0.4	-3.2
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	+0.3	+0.1	-0.3	+0.7	-4.3
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-0.4	-1.4	-0.1	+0.5	-2.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.4	-0.3	-2.4	-0.3
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-0.1	-0.8	-0.1	-1.2	-1.2
carbon source	Citric Acid 16.67 mM (C)	-0.2	+1.0	+0.3	-2.0	-2.5
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-0.4	-0.0	-0.1	+0.0	-2.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	-2.0	+0.0	-1.9	+0.2
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	+0.5	+0.2	-0.3	+1.1	-4.4
in planta	1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.4	+0.6	+0.2	+0.7	-4.0
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	+0.5	+0.4	-0.1	-1.4	-2.1
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	+0.7	-0.1	-0.1	-1.3	-1.9
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	+0.0	+0.2	+0.0	-0.2	-2.7
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	+0.2	-0.7	+0.1	+1.1	-3.0
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-0.5	+1.2	-0.2	-0.6	-1.7
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	+1.1	-0.4	+0.5	-0.2	-2.6
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	+0.0	+0.9	+0.1	+0.8	-3.4
carbon source	D-Fructose 16.67 mM (C)	-0.4	-0.2	-0.3	+2.1	-2.8
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	+0.6	+0.7	+0.0	-0.3	-2.1
carbon source	D-Glucose 16.67 mM (C)	-0.2	-0.8	-0.1	+2.7	-2.3
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	+0.1	+2.9	-0.0	-0.4	-3.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.4	-0.2	-1.3	+0.9