Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.1880.1 and Xcc-8004.1881.1 are separated by 169 nucleotidesXcc-8004.1881.1 and Xcc-8004.1882.1 are separated by 12 nucleotidesXcc-8004.1882.1 and Xcc-8004.1883.1 are separated by 98 nucleotidesXcc-8004.1883.1 and Xcc-8004.1884.1 are separated by 169 nucleotides Xcc-8004.1880.1: Xcc-8004.1880.1 - Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-), at 1,812,735 to 1,814,234 Xcc-8004.1880.1 Xcc-8004.1881.1: Xcc-8004.1881.1 - FIG005080: Possible exported protein, at 1,814,404 to 1,818,294 Xcc-8004.1881.1 Xcc-8004.1882.1: Xcc-8004.1882.1 - FIG01211261: hypothetical protein, at 1,818,307 to 1,819,062 Xcc-8004.1882.1 Xcc-8004.1883.1: Xcc-8004.1883.1 - TldD protein, part of TldE/TldD proteolytic complex, at 1,819,161 to 1,820,606 Xcc-8004.1883.1 Xcc-8004.1884.1: Xcc-8004.1884.1 - FIG138315: Putative alpha helix protein, at 1,820,776 to 1,821,357 Xcc-8004.1884.1
Group Condition Xcc-8004.1880.1 Xcc-8004.1881.1 Xcc-8004.1882.1 Xcc-8004.1883.1 Xcc-8004.1884.1
carbon source Citric Acid 16.67 mM (C) -1.9 -0.9 +0.2 +0.0 N.D.
carbon source D-Fructose 16.67 mM (C) -2.8 -0.4 +0.1 +0.4 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -1.3 -0.9 +0.1 +0.0 N.D.
carbon source D-Glucose 16.67 mM (C) -2.3 -0.8 -0.1 +1.2 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -1.5 -0.3 +0.0 -0.1 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -1.1 -0.5 -0.1 +0.1 N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.7 -0.9 +0.2 -0.3 N.D.
carbon source Pectin from apple 2 g/L (C) -1.5 -0.5 +0.1 +0.5 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -1.3 -0.4 +0.6 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.6 +0.0 -0.2 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.5 +0.3 -0.2 +0.2 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) -1.8 -0.0 +0.4 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 +0.1 -0.5 +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.9 +0.3 +0.2 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.6 +0.3 -0.0 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.4 +0.1 -0.1 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.4 +0.2 +0.1 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.3 +0.2 -0.1 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.3 +0.1 +0.2 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.4 +0.2 -0.0 +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.6 +0.3 +0.2 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.3 +0.3 +0.1 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.1 +0.1 -0.1 +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.1 +0.1 +0.4 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 +0.6 -0.4 +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.0 +0.4 +0.3 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.0 +0.5 +0.4 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.8 +0.7 +0.0 +0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.1 +0.6 +0.6 +0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 +0.4 +0.6 +0.2 N.D.
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