Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.1730.1 and Xcc-8004.1731.1 are separated by 153 nucleotidesXcc-8004.1731.1 and Xcc-8004.1732.1 are separated by 243 nucleotidesXcc-8004.1732.1 and Xcc-8004.1734.1 are separated by 280 nucleotidesXcc-8004.1734.1 and Xcc-8004.1735.1 are separated by 191 nucleotides Xcc-8004.1730.1: Xcc-8004.1730.1 - UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9), at 1,660,894 to 1,662,300 Xcc-8004.1730.1 Xcc-8004.1731.1: Xcc-8004.1731.1 - Dienelactone hydrolase family protein, at 1,662,454 to 1,663,254 Xcc-8004.1731.1 Xcc-8004.1732.1: Xcc-8004.1732.1 - hypothetical protein, at 1,663,498 to 1,664,496 Xcc-8004.1732.1 Xcc-8004.1734.1: Xcc-8004.1734.1 - Single-stranded DNA-binding protein, at 1,664,777 to 1,665,295 Xcc-8004.1734.1 Xcc-8004.1735.1: Xcc-8004.1735.1 - putative; ORF located using Glimmer/Genemark, at 1,665,487 to 1,665,783 Xcc-8004.1735.1
Group Condition Xcc-8004.1730.1 Xcc-8004.1731.1 Xcc-8004.1732.1 Xcc-8004.1734.1 Xcc-8004.1735.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. +0.1 N.D. N.D. -1.6
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. -0.9 N.D. N.D. -0.6
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. +0.1 N.D. N.D. -1.4
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. -0.6 N.D. N.D. -0.6
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. +0.5 N.D. N.D. -1.7
in planta xylem Xylemvessel barcodes T1L3P4 N.D. -0.4 N.D. N.D. -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.4 N.D. N.D. -0.2
in planta xylem Xylemvessel barcodes T0L1P3 N.D. +0.2 N.D. N.D. -0.7
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -0.8 N.D. N.D. +0.4
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. +0.4 N.D. N.D. -0.3
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. -0.3 N.D. N.D. +0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. -0.2 N.D. N.D. +0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.3 N.D. N.D. +0.5
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. -0.4 N.D. N.D. +0.7
control PBS control N.D. -0.2 N.D. N.D. +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 N.D. N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.1 N.D. N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.1 N.D. N.D. +0.6
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. +0.0 N.D. N.D. +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.3 N.D. N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.2 N.D. N.D. +0.5
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. -0.1 N.D. N.D. +0.9
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. +0.4 N.D. N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.3 N.D. N.D. +0.7
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. +0.2 N.D. N.D. +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.6 N.D. N.D. +0.4
r2a control R2A control N.D. +0.1 N.D. N.D. +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.3 N.D. N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.3 N.D. N.D. +0.8
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. +0.5 N.D. N.D. +0.7
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Xcc-8004.1730.1
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Xcc-8004.1731.1
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Xcc-8004.1732.1		 remove
Xcc-8004.1734.1
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Xcc-8004.1735.1
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