Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.170.1 and Xcc-8004.171.1 overlap by 10 nucleotidesXcc-8004.171.1 and Xcc-8004.172.1 are separated by 447 nucleotidesXcc-8004.172.1 and Xcc-8004.173.1 are separated by 63 nucleotidesXcc-8004.173.1 and Xcc-8004.174.1 are separated by 306 nucleotides Xcc-8004.170.1: Xcc-8004.170.1 - Mobile element protein, at 162,213 to 163,193 Xcc-8004.170.1 Xcc-8004.171.1: Xcc-8004.171.1 - hypothetical protein, at 163,184 to 163,294 Xcc-8004.171.1 Xcc-8004.172.1: Xcc-8004.172.1 - Mobile element protein, at 163,742 to 164,440 Xcc-8004.172.1 Xcc-8004.173.1: Xcc-8004.173.1 - Mobile element protein, at 164,504 to 164,956 Xcc-8004.173.1 Xcc-8004.174.1: Xcc-8004.174.1 - RhsD protein, at 165,263 to 169,507 Xcc-8004.174.1
Group Condition Xcc-8004.170.1 Xcc-8004.171.1 Xcc-8004.172.1 Xcc-8004.173.1 Xcc-8004.174.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -5.2 N.D. N.D. -0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -4.8 N.D. N.D. +0.1
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. -2.3 N.D. N.D. -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -2.2 N.D. N.D. -0.0
in planta xylem Xylemvessel barcodes T0L2P4 N.D. -2.3 N.D. N.D. +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -2.1 N.D. N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -2.1 N.D. N.D. -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.8 N.D. N.D. -0.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. -1.7 N.D. N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.7 N.D. N.D. -0.0
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. -1.7 N.D. N.D. +0.1
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. -1.6 N.D. N.D. -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.6 N.D. N.D. +0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -1.5 N.D. N.D. +0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. -1.4 N.D. N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.3 N.D. N.D. -0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. -1.3 N.D. N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.3 N.D. N.D. +0.0
in planta xylem Xylemvessel barcodes T0L1P3 N.D. -1.3 N.D. N.D. +0.1
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. -1.3 N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes T0L1P4 N.D. -1.3 N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -1.3 N.D. N.D. +0.1
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. -1.0 N.D. N.D. -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.0 N.D. N.D. -0.0
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. -1.1 N.D. N.D. +0.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days N.D. +1.1 N.D. N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +1.2 N.D. N.D. +0.0
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. +1.2 N.D. N.D. +0.0
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. +1.1 N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. +1.6 N.D. N.D. -0.1
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