Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.150.1	Xcc-8004.151.1	Xcc-8004.153.1	Xcc-8004.154.1	Xcc-8004.155.1
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-0.2	-0.0	+0.0	N.D.	-1.9
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	+0.1	-0.1	+0.2	N.D.	-2.1
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.2	+0.0	+0.1	N.D.	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	+0.1	-0.1	N.D.	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.2	-0.1	N.D.	-1.1
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-0.3	+0.1	-0.1	N.D.	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	+0.1	+0.1	N.D.	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.1	-0.0	N.D.	-0.5
r2a control	R2A control	-0.3	+0.1	-0.1	N.D.	-0.5
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-0.1	+0.1	-0.1	N.D.	-0.9
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	-0.2	+0.0	+0.1	N.D.	-0.6
in planta	1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.5	+0.2	-0.0	N.D.	-0.4
carbon source	Pectin from apple 2 g/L (C)	+0.1	+0.1	-0.0	N.D.	-0.9
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	+0.2	+0.2	+0.3	N.D.	-0.9
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.3	+0.1	-0.2	N.D.	+0.5
control	PBS control	+0.2	+0.3	+0.1	N.D.	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.4	-0.0	-0.0	N.D.	+0.6
in planta xylem	Xylemvessel barcodes T0L1P4	-0.1	-0.1	-0.2	N.D.	+0.9
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.2	+0.2	-0.0	N.D.	+0.6
carbon source	Citric Acid 10mM (C)	+0.1	+0.0	-0.1	N.D.	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	+0.1	-0.1	N.D.	+0.4
supernatant control:fungal media	R2A with Vogels_fungal_media 0.2X	-0.0	+0.2	+0.1	N.D.	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.0	+0.1	-0.0	N.D.	+0.8
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	-0.1	+0.2	-0.0	N.D.	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+0.3	+0.1	N.D.	+0.5
in planta xylem	Xylemvessel barcodes T1L3P4	+0.6	+0.2	-0.0	N.D.	+0.6
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-0.2	+0.2	+0.0	N.D.	+1.6
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	+0.1	+0.3	+0.2	N.D.	+1.3
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	+0.5	+0.1	-0.0	N.D.	+1.4
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	+0.3	+0.0	+0.1	N.D.	+1.7