Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.1439.1 and Xcc-8004.1440.1 are separated by 52 nucleotidesXcc-8004.1440.1 and Xcc-8004.1441.1 are separated by 11 nucleotidesXcc-8004.1441.1 and Xcc-8004.1442.1 are separated by 91 nucleotidesXcc-8004.1442.1 and Xcc-8004.1443.1 overlap by 11 nucleotides Xcc-8004.1439.1: Xcc-8004.1439.1 - Holliday junction DNA helicase RuvB, at 1,379,129 to 1,380,169 Xcc-8004.1439.1 Xcc-8004.1440.1: Xcc-8004.1440.1 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 1,380,222 to 1,380,680 Xcc-8004.1440.1 Xcc-8004.1441.1: Xcc-8004.1441.1 - MotA/TolQ/ExbB proton channel family protein, at 1,380,692 to 1,381,471 Xcc-8004.1441.1 Xcc-8004.1442.1: Xcc-8004.1442.1 - Tol biopolymer transport system, TolR protein, at 1,381,563 to 1,382,012 Xcc-8004.1442.1 Xcc-8004.1443.1: Xcc-8004.1443.1 - TolA protein, at 1,382,002 to 1,383,039 Xcc-8004.1443.1
Group Condition Xcc-8004.1439.1 Xcc-8004.1440.1 Xcc-8004.1441.1 Xcc-8004.1442.1 Xcc-8004.1443.1
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. -0.7 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. -0.7 N.D. N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. -0.6 N.D. N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days N.D. -0.6 N.D. N.D. N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. -0.5 N.D. N.D. N.D.
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH N.D. -0.5 N.D. N.D. N.D.
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. -0.5 N.D. N.D. N.D.
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) N.D. -0.5 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -0.4 N.D. N.D. N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days N.D. -0.4 N.D. N.D. N.D.
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino N.D. -0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.4 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. -0.4 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.4 N.D. N.D. N.D.
r2a control R2A control N.D. +0.4 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. +0.4 N.D. N.D. N.D.
control PBS control N.D. +0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.5 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.5 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.5 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. +0.5 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.5 N.D. N.D. N.D.
carbon source Citric Acid 16.67 mM (C) N.D. +0.6 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.6 N.D. N.D. N.D.
carbon source D-Glucose 16.67 mM (C) N.D. +0.6 N.D. N.D. N.D.
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. +0.7 N.D. N.D. N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. +0.7 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +1.0 N.D. N.D. N.D.
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