Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.1368.1	Xcc-8004.1369.1	Xcc-8004.1371.1	Xcc-8004.1372.1	Xcc-8004.1373.1
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	-0.1	-0.1	+0.0	-5.6	+0.1
carbon source	Citric Acid 10mM (C)	+0.0	-0.5	-0.7	-4.3	+0.0
carbon source	Citric Acid 16.67 mM (C)	+0.2	-0.0	-0.8	-4.7	-0.0
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	+0.0	+0.2	-0.1	-5.3	-0.0
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	+0.1	+0.6	-0.1	-5.0	-0.0
carbon source	D-Fructose 16.67 mM (C)	+0.0	+0.1	-0.2	-4.3	+0.1
carbon source	D-Glucose 16.67 mM (C)	+0.0	-0.0	+0.0	-4.3	+0.1
carbon source	Pectin from apple 2 g/L (C)	-0.0	+0.1	-0.2	-3.8	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.6	-0.2	-2.4	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	-0.4	+0.0	-2.5	-0.2
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	-0.1	-0.1	+0.1	-2.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.5	+0.0	-2.2	-0.4
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	+0.1	+0.6	-0.3	-3.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.4	+0.4	-2.4	-0.2
xantho_mme_glucose_casamino	Xantho_MME_glucose_casamino	+0.0	+0.1	+0.1	-2.7	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	+0.2	-0.1	-2.5	+0.0
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	+0.1	+0.5	+0.1	-2.3	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-0.2	-0.1	-2.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-0.0	+0.1	-2.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	-0.3	+0.2	-2.6	+0.2
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	+0.2	+0.0	+0.2	-2.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+0.1	+0.1	-2.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.2	+0.2	-2.5	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.2	+0.2	-2.5	-0.1
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	+0.1	+0.3	+0.1	-2.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.3	+0.1	-2.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-0.3	+0.3	-2.2	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.1	+0.4	-2.4	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.2	+0.3	-0.1	-2.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+0.3	+0.3	-2.3	+0.3