Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.1335.1 and Xcc-8004.1336.1 overlap by 8 nucleotidesXcc-8004.1336.1 and Xcc-8004.1337.1 are separated by 142 nucleotidesXcc-8004.1337.1 and Xcc-8004.1338.1 overlap by 4 nucleotidesXcc-8004.1338.1 and Xcc-8004.1339.1 are separated by 74 nucleotides Xcc-8004.1335.1: Xcc-8004.1335.1 - Two-component system regulatory protein, at 1,265,512 to 1,266,189 Xcc-8004.1335.1 Xcc-8004.1336.1: Xcc-8004.1336.1 - two-component system sensor protein, at 1,266,182 to 1,267,516 Xcc-8004.1336.1 Xcc-8004.1337.1: Xcc-8004.1337.1 - FIG001353: Acetyltransferase, at 1,267,659 to 1,268,150 Xcc-8004.1337.1 Xcc-8004.1338.1: Xcc-8004.1338.1 - FIG032766: hypothetical protein, at 1,268,147 to 1,268,437 Xcc-8004.1338.1 Xcc-8004.1339.1: Xcc-8004.1339.1 - FIG01213809: hypothetical protein, at 1,268,512 to 1,268,946 Xcc-8004.1339.1
Group Condition Xcc-8004.1335.1 Xcc-8004.1336.1 Xcc-8004.1337.1 Xcc-8004.1338.1 Xcc-8004.1339.1
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. -4.3 -0.5 N.D. +0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. -3.7 -0.6 N.D. -0.2
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. -3.2 -0.0 N.D. -0.7
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. -3.6 -0.1 N.D. -0.2
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. -3.9 +0.8 N.D. -0.7
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. -3.3 +0.1 N.D. -0.6
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. -2.3 -0.4 N.D. -0.8
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. -3.4 +0.0 N.D. -0.1
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. -3.7 -0.1 N.D. +0.4
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. -3.5 -0.2 N.D. +0.3
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. -3.5 +0.3 N.D. -0.1
carbon source Citric Acid 16.67 mM (C) N.D. -3.0 -0.4 N.D. +0.1
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. -3.2 -0.0 N.D. -0.1
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) N.D. -3.1 +0.0 N.D. -0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. -3.5 +0.1 N.D. +0.3
control PBS control N.D. -3.3 +0.2 N.D. +0.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -2.8 -0.0 N.D. -0.1
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. -2.8 -0.1 N.D. -0.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. -2.6 -0.6 N.D. +0.3
carbon source D-Fructose 16.67 mM (C) N.D. -2.9 +0.2 N.D. -0.3
control PBS control N.D. -3.0 +0.1 N.D. +0.2
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. -3.0 +0.4 N.D. -0.1
control PBS control N.D. -3.1 +0.4 N.D. +0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -2.6 +0.2 N.D. -0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -1.7 -0.1 N.D. -0.6
carbon source Pectin from apple 2 g/L (C) N.D. -2.2 -0.1 N.D. +0.1
carbon source D-Glucose 16.67 mM (C) N.D. -2.1 -0.1 N.D. +0.1
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -1.7 -0.1 N.D. -0.3
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. -1.5 -0.2 N.D. -0.4
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -1.7 +0.5 N.D. +0.2
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