Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.1248.1	Xcc-8004.1249.1	Xcc-8004.1250.1	Xcc-8004.1251.1	Xcc-8004.1252.1
carbon source	Citric Acid 16.67 mM (C)	-3.2	-3.7	N.D.	-0.6	-0.2
carbon source	Citric Acid 10mM (C)	-2.8	-3.8	N.D.	-0.3	-0.0
carbon source	D-Glucose 16.67 mM (C)	-3.1	-3.7	N.D.	+0.4	+0.2
carbon source	D-Fructose 16.67 mM (C)	-3.1	-3.7	N.D.	+0.4	+0.3
carbon source	Pectin from apple 2 g/L (C)	-2.5	-3.8	N.D.	+0.2	+0.2
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-0.4	-2.8	N.D.	-0.6	+0.0
in planta xylem	Xylemvessel barcodes T0L2P4	-0.7	-2.0	N.D.	-0.8	+0.0
in planta xylem	Xylemvessel barcodes T0L1P3	-0.1	-1.7	N.D.	-1.3	+0.3
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-0.7	-2.9	N.D.	+1.1	-0.0
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	-0.6	-1.7	N.D.	+0.1	-0.2
clovis xylem sap	Clovis xylem sap	-1.2	-0.7	N.D.	-0.2	+0.1
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.5	-0.8	N.D.	-0.5	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-1.1	N.D.	-0.1	-0.2
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-0.1	-1.5	N.D.	-0.1	-0.2
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.2	-1.0	N.D.	-0.4	-0.1
in planta	1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.1	-0.8	N.D.	-0.8	+0.0
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	-0.2	-2.0	N.D.	+0.5	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-1.3	N.D.	-0.1	+0.1
in planta xylem	Xylemvessel barcodes T0L1P4	-0.5	-0.9	N.D.	-0.1	+0.2
clovis xylem sap	Clovis xylem sap	-0.6	-0.9	N.D.	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-1.2	N.D.	-0.2	+0.1
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	+0.2	-1.3	N.D.	+0.4	-0.2
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	-0.3	-0.9	N.D.	+0.3	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	-0.5	N.D.	-0.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-1.3	N.D.	+0.5	+0.0
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	+0.1	-0.9	N.D.	+0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.8	N.D.	+0.5	-0.1
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	+0.2	-0.2	N.D.	-0.8	+0.4
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	-0.3	-0.7	N.D.	+0.4	+0.2
control	PBS control	-0.3	+0.8	N.D.	+0.3	+0.1