Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.1205.1	Xcc-8004.1206.1	Xcc-8004.1207.1	Xcc-8004.1208.1	Xcc-8004.1209.1
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	-4.7	+0.2	+0.1	-0.2	+0.2
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-3.8	+0.4	-0.2	-0.2	-0.1
carbon source	Citric Acid 10mM (C)	-3.1	+0.0	-0.2	-0.4	-0.3
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-4.5	-0.1	+0.1	-0.0	+0.6
carbon source	Citric Acid 16.67 mM (C)	-3.8	+0.1	-0.0	+0.1	-0.3
carbon source	Pectin from apple 2 g/L (C)	-3.7	+0.1	-0.2	-0.0	+0.1
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	-3.4	+0.1	+0.5	-0.1	-0.5
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-1.8	-0.1	-0.2	-1.0	-0.1
carbon source	D-Glucose 16.67 mM (C)	-2.6	-0.1	-0.0	-0.5	+0.1
carbon source	D-Fructose 16.67 mM (C)	-2.1	-0.3	-0.2	-0.3	-0.2
in planta xylem	Xylemvessel barcodes T0L1P4	-2.3	+0.3	-0.0	-0.1	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.7	-0.1	-0.2	-0.4	-0.4
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-3.1	-0.1	+0.1	-0.0	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.0	-0.4	+0.0	-0.1	-0.1
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	-2.8	-0.2	+0.2	-0.0	+0.2
clovis xylem sap	Clovis xylem sap	-2.7	+0.0	+0.2	-0.1	+0.0
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-2.9	-0.1	+0.1	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-2.4	-0.4	+0.2	-0.0	+0.2
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-3.5	+0.1	+0.1	+0.3	+0.6
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	-3.3	+0.1	+0.3	+0.4	+0.1
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	-2.2	+0.3	+0.3	-0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	-0.3	+0.5	-1.6	-0.5
in planta	1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-4.0	+0.7	+0.6	+0.2	+0.6
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	-1.3	+0.3	+0.0	-1.0	+0.1
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-2.9	+0.4	+0.5	+0.3	-0.3
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-2.2	+0.0	+0.3	+0.1	+0.0
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	-4.6	+0.8	+0.2	+1.2	+0.6
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-2.0	+0.0	-0.1	+0.4	+0.2
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	-1.1	-0.2	+0.4	+0.5	+0.4
in planta xylem	Xylemvessel barcodes T0L1P3	-0.7	+0.3	+0.6	+0.5	+0.4