Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.1199.1	Xcc-8004.1200.1	Xcc-8004.1202.1	Xcc-8004.1203.1	Xcc-8004.1204.1
in planta xylem	Xylemvessel barcodes T0L2P4	N.D.	-3.9	N.D.	+0.3	-0.7
r2a control	R2A control	N.D.	-3.8	N.D.	-0.0	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-2.8	N.D.	-0.4	-0.5
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	N.D.	-2.4	N.D.	+0.2	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-1.5	N.D.	-0.2	-0.7
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	N.D.	-0.2	N.D.	+0.3	-2.4
control	PBS control	N.D.	-1.7	N.D.	+0.1	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-1.0	N.D.	-0.5	-0.5
clovis xylem sap	Clovis xylem sap	N.D.	-1.1	N.D.	-0.3	-0.4
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	N.D.	-0.9	N.D.	+0.3	-1.1
moka	MOKA	N.D.	+0.1	N.D.	-0.1	-1.3
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	N.D.	-1.3	N.D.	+0.5	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.3	N.D.	-0.2	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-1.2	N.D.	-0.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-2.0	N.D.	+0.1	+1.5
supernatant	Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x	N.D.	-0.9	N.D.	+0.2	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-0.9	N.D.	-0.1	+0.7
in planta xylem	Xylemvessel barcodes T1L3P4	N.D.	+0.8	N.D.	+0.4	-1.3
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	N.D.	+0.9	N.D.	-0.0	-1.0
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	N.D.	+1.5	N.D.	+0.3	-1.9
carbon source	Citric Acid 10mM (C)	N.D.	+0.7	N.D.	+0.2	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+1.2	N.D.	-0.2	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.6	N.D.	-0.6	+0.3
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	N.D.	+0.6	N.D.	+0.4	-0.5
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	N.D.	+1.4	N.D.	-0.0	-0.9
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	N.D.	+1.2	N.D.	-0.2	-0.3
xantho_mme_glucose_casamino	Xantho_MME_glucose_casamino	N.D.	+1.2	N.D.	-0.1	-0.3
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	N.D.	+0.8	N.D.	+0.6	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.7	N.D.	-0.1	+0.8
in planta xylem	Xylemvessel barcodes Location 2 6 dpi (25 plantes)	N.D.	+1.4	N.D.	+0.0	+0.2