Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	Xcc-8004.1194.1	Xcc-8004.1196.1	Xcc-8004.1198.1	Xcc-8004.1199.1	Xcc-8004.1200.1
in planta xylem	Xylemvessel barcodes T0L2P4	+0.2	-0.9	-0.3	N.D.	-3.9
r2a control	R2A control	+0.1	-0.2	-0.3	N.D.	-3.8
in planta	1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)	-0.1	-1.0	+0.0	N.D.	-2.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	-0.4	-0.2	N.D.	-2.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.1	-1.6	-0.4	N.D.	-1.2
in planta xylem	Xylemvessel barcodes Location 3 6 dpi (25 plantes)	+0.3	-0.8	-0.8	N.D.	-1.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-1.6	-0.1	N.D.	-0.9
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-0.3	-1.0	-0.4	N.D.	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.3	+0.1	N.D.	-2.0
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	-0.0	-2.5	-0.4	N.D.	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.0	-2.1	-0.1	N.D.	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.1	-1.3	+0.0	N.D.	-0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-1.4	+0.1	N.D.	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-1.6	-0.2	N.D.	-0.2
in planta xylem	Xylemvessel barcodes Location 2 4 dpi (25 plantes)	+0.2	-0.9	-0.2	N.D.	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	-0.1	-2.1	-0.2	N.D.	+0.6
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	-0.0	-2.0	+0.3	N.D.	+0.1
xantho_mme_glucose_dropout_lth	Xantho_MME_glucose_dropout_LTH	-0.1	-2.6	-0.1	N.D.	+1.2
xantho_mme_glucose_casamino	Xantho_MME_glucose_casamino	-0.1	-1.8	+0.0	N.D.	+0.3
xantho_mme_glucose_casamino	Xantho_MME_glucose_casamino	+0.0	-2.4	-0.3	N.D.	+1.2
carbon source	Citric Acid 16.67 mM (C)	+0.2	-2.0	-0.1	N.D.	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+0.2	-0.4	N.D.	-1.5
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.0	-1.8	+0.0	N.D.	+0.5
carbon source	Citric Acid 10mM (C)	+0.1	-1.8	-0.1	N.D.	+0.7
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days	-0.6	-1.0	+0.4	N.D.	+0.6
in planta xylem	Xylemvessel barcodes T1L3P4	-0.0	-1.3	+0.1	N.D.	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	-1.0	+0.0	N.D.	+1.2
in planta mesophyll	Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days	-0.0	-0.9	+0.3	N.D.	+0.9
in planta	1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together)	+0.0	-0.4	-0.5	N.D.	+1.4
in planta xylem	Xylemvessel barcodes Location 3 4 dpi (25 plantes)	+0.1	-0.7	+0.8	N.D.	+0.8