Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.1176.1 and Xcc-8004.1177.1 overlap by 90 nucleotidesXcc-8004.1177.1 and Xcc-8004.1178.1 overlap by 7 nucleotidesXcc-8004.1178.1 and Xcc-8004.1179.1 are separated by 147 nucleotidesXcc-8004.1179.1 and Xcc-8004.1180.1 are separated by 309 nucleotides Xcc-8004.1176.1: Xcc-8004.1176.1 - hypothetical protein, at 1,110,416 to 1,110,613 Xcc-8004.1176.1 Xcc-8004.1177.1: Xcc-8004.1177.1 - Mobile element protein, at 1,110,524 to 1,110,787 Xcc-8004.1177.1 Xcc-8004.1178.1: Xcc-8004.1178.1 - Mobile element protein, at 1,110,781 to 1,111,626 Xcc-8004.1178.1 Xcc-8004.1179.1: Xcc-8004.1179.1 - Proline imino-peptidase, at 1,111,774 to 1,113,102 Xcc-8004.1179.1 Xcc-8004.1180.1: Xcc-8004.1180.1 - Transketolase (EC 2.2.1.1), at 1,113,412 to 1,115,412 Xcc-8004.1180.1
Group Condition Xcc-8004.1176.1 Xcc-8004.1177.1 Xcc-8004.1178.1 Xcc-8004.1179.1 Xcc-8004.1180.1
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. N.D. -0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.2 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x N.D. N.D. N.D. -0.2 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. N.D. N.D. -0.2 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. N.D. -0.2 N.D.
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days N.D. N.D. N.D. -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.2 N.D.
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) and Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x N.D. N.D. N.D. -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. N.D. -0.2 N.D.
in planta 1600 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) N.D. N.D. N.D. -0.2 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. N.D. +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +0.2 N.D.
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) N.D. N.D. N.D. +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. +0.2 N.D.
carbon source Citric Acid 16.67 mM (C) N.D. N.D. N.D. +0.3 N.D.
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) N.D. N.D. N.D. +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. +0.3 N.D.
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) N.D. N.D. N.D. +0.4 N.D.
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) N.D. N.D. N.D. +0.5 N.D.
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Xcc-8004.1176.1
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