Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

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500 ntXcc-8004.1175.1 and Xcc-8004.1176.1 are separated by 113 nucleotidesXcc-8004.1176.1 and Xcc-8004.1177.1 overlap by 90 nucleotidesXcc-8004.1177.1 and Xcc-8004.1178.1 overlap by 7 nucleotidesXcc-8004.1178.1 and Xcc-8004.1179.1 are separated by 147 nucleotides Xcc-8004.1175.1: Xcc-8004.1175.1 - FhuE receptor precursor, at 1,109,619 to 1,110,302 Xcc-8004.1175.1 Xcc-8004.1176.1: Xcc-8004.1176.1 - hypothetical protein, at 1,110,416 to 1,110,613 Xcc-8004.1176.1 Xcc-8004.1177.1: Xcc-8004.1177.1 - Mobile element protein, at 1,110,524 to 1,110,787 Xcc-8004.1177.1 Xcc-8004.1178.1: Xcc-8004.1178.1 - Mobile element protein, at 1,110,781 to 1,111,626 Xcc-8004.1178.1 Xcc-8004.1179.1: Xcc-8004.1179.1 - Proline imino-peptidase, at 1,111,774 to 1,113,102 Xcc-8004.1179.1
Group Condition Xcc-8004.1175.1 Xcc-8004.1176.1 Xcc-8004.1177.1 Xcc-8004.1178.1 Xcc-8004.1179.1
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.8 N.D. N.D. N.D. -0.6
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.9 N.D. N.D. N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 N.D. N.D. N.D. -0.3
in planta xylem Xylemvessel barcodes T0L1P3 -0.8 N.D. N.D. N.D. -0.1
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.6 N.D. N.D. N.D. -0.2
supernatant Supernatant; Pseudomonas fluorescens CFPB 13502 grown in 0.1x TSB, 0.4x -0.5 N.D. N.D. N.D. -0.1
in planta xylem Xylemvessel barcodes T0L1P4 -0.5 N.D. N.D. N.D. -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 N.D. N.D. N.D. -0.3
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -0.7 N.D. N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 N.D. N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 N.D. N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) -0.7 N.D. N.D. N.D. +0.4
carbon source Citric Acid 16.67 mM (C) -0.4 N.D. N.D. N.D. +0.3
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.3 N.D. N.D. N.D. +0.2
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.6 N.D. N.D. N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 N.D. N.D. N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 N.D. N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 N.D. N.D. N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 N.D. N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 N.D. N.D. N.D. -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 N.D. N.D. N.D. +0.1
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.4 N.D. N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 N.D. N.D. N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.5 N.D. N.D. N.D. +0.0
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +0.4 N.D. N.D. N.D. +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 N.D. N.D. N.D. +0.1
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days +0.9 N.D. N.D. N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 N.D. N.D. N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 N.D. N.D. N.D. +0.3
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.6 N.D. N.D. N.D. +0.3
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