Fitness for 5 genes in Xanthomonas campestris pv. campestris strain 8004

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 98 experiments or choose conditions or try the comparative fitness browser

500 ntXcc-8004.1099.1 and Xcc-8004.1100.1 are separated by 35 nucleotidesXcc-8004.1100.1 and Xcc-8004.1101.1 overlap by 31 nucleotidesXcc-8004.1101.1 and Xcc-8004.1102.1 are separated by 25 nucleotidesXcc-8004.1102.1 and Xcc-8004.1103.1 are separated by 7 nucleotides Xcc-8004.1099.1: Xcc-8004.1099.1 - Inner membrane protein of type IV secretion of T-DNA complex, VirB6, at 1,046,446 to 1,047,567 Xcc-8004.1099.1 Xcc-8004.1100.1: Xcc-8004.1100.1 - Type IV fimbrial biogenesis protein PilY1, at 1,047,603 to 1,047,707 Xcc-8004.1100.1 Xcc-8004.1101.1: Xcc-8004.1101.1 - Mobile element protein, at 1,047,677 to 1,049,101 Xcc-8004.1101.1 Xcc-8004.1102.1: Xcc-8004.1102.1 - Minor pilin of type IV secretion complex, VirB5, at 1,049,127 to 1,049,612 Xcc-8004.1102.1 Xcc-8004.1103.1: Xcc-8004.1103.1 - hypothetical protein, at 1,049,620 to 1,049,889 Xcc-8004.1103.1
Group Condition Xcc-8004.1099.1 Xcc-8004.1100.1 Xcc-8004.1101.1 Xcc-8004.1102.1 Xcc-8004.1103.1
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) +0.1 N.D. N.D. -0.6 -0.5
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino -0.3 N.D. N.D. -0.3 -0.3
in planta 1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together) -0.7 N.D. N.D. -0.1 -0.0
in planta xylem Xylemvessel barcodes Location 3 6 dpi (25 plantes) -0.1 N.D. N.D. +0.2 -0.8
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -0.4 N.D. N.D. -0.0 -0.3
clovis xylem sap Clovis xylem sap -0.1 N.D. N.D. -0.1 -0.4
control PBS control -0.0 N.D. N.D. -0.3 -0.3
in planta xylem Xylemvessel barcodes T0L1P3 -0.1 N.D. N.D. +0.0 -0.5
supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x -0.2 N.D. N.D. +0.1 -0.4
xantho_mme_glucose_casamino Xantho_MME_glucose_casamino -0.4 N.D. N.D. -0.2 +0.2
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days +0.2 N.D. N.D. +0.0 -0.6
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH +0.2 N.D. N.D. -0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 N.D. N.D. +0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 N.D. N.D. +0.2 -0.0
xantho_mme_glucose_dropout_lth Xantho_MME_glucose_dropout_LTH +0.2 N.D. N.D. -0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 N.D. N.D. +0.3 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 N.D. N.D. -0.1 -0.2
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) -0.1 N.D. N.D. -0.2 +0.4
in planta xylem Xylemvessel barcodes Location 2 6 dpi (25 plantes) +0.3 N.D. N.D. +0.2 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 N.D. N.D. -0.2 +0.2
r2a control R2A control -0.2 N.D. N.D. +0.2 +0.2
in planta xylem Xylemvessel barcodes Location 2 4 dpi (25 plantes) +0.5 N.D. N.D. +0.2 -0.4
in planta 1664 hydathodes 6 dpi (Dna extract from 8 * 208 hydathodes and pooled together) -0.1 N.D. N.D. +0.2 +0.2
in planta xylem Xylemvessel barcodes T0L2P4 +0.2 N.D. N.D. +0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 N.D. N.D. +0.2 +0.2
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=2_days +0.6 N.D. N.D. +0.1 -0.1
in planta xylem Xylemvessel barcodes Location 3 4 dpi (25 plantes) +0.3 N.D. N.D. +0.5 -0.0
in planta mesophyll Plant=Cauliflower; Treatment=None; Sample=Mesophyll; Collection=Direct; Time=3_days -0.0 N.D. N.D. +0.3 +0.5
in planta xylem Xylemvessel barcodes T0L1P4 +0.5 N.D. N.D. +0.1 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 N.D. N.D. +0.5 +0.2
remove
Xcc-8004.1099.1
plot		 remove
Xcc-8004.1100.1
plot		 remove
Xcc-8004.1101.1		 remove
Xcc-8004.1102.1
plot		 remove
Xcc-8004.1103.1
plot