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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_025075 and TX73_025080 are separated by 75 nucleotides
TX73_025080 and TX73_025085 are separated by 67 nucleotides
TX73_025085 and TX73_025090 are separated by 23 nucleotides
TX73_025090 and TX73_025095 are separated by 279 nucleotides
TX73_025075: TX73_025075 - MerR family transcriptional regulator, at 5,448,816 to 5,449,169
_025075
TX73_025080: TX73_025080 - DNA helicase RecQ, at 5,449,245 to 5,451,095
_025080
TX73_025085: TX73_025085 - zinc ribbon domain-containing protein, at 5,451,163 to 5,451,390
_025085
TX73_025090: TX73_025090 - DUF3551 domain-containing protein, at 5,451,414 to 5,451,692
_025090
TX73_025095: TX73_025095 - AMP-binding protein, at 5,451,972 to 5,453,558
_025095
Group
Condition
TX73
_025075
TX73
_025080
TX73
_025085
TX73
_025090
TX73
_025095
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.4
+0.0
-0.7
-0.9
-0.2
sulfur source
sodium isethionate sulfur source
-0.3
-0.0
-1.3
-0.2
+0.1
carbon source
Citraconic (C); anaerobic
-0.4
+0.0
-0.7
-0.0
-0.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.5
+0.0
-0.2
-0.6
+0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.3
+0.1
-0.2
-0.8
+0.0
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.2
-0.1
-0.5
-0.3
+0.0
sulfur source control
sulfur source control
-0.0
-0.1
-0.5
-0.4
+0.0
sulfur source
sodium isethionate sulfur source
-0.0
-0.1
-0.1
-0.6
-0.2
sulfur source
Taurine sulfur source
-0.1
-0.1
-0.6
-0.2
-0.1
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
-0.3
-0.1
-0.3
-0.1
-0.1
carbon source
aspen wood chips that have been decomposed by a fungus (C)
-0.0
+0.0
-0.3
-0.6
+0.0
stress
Benzoate (C), sodium fluoride stress
-0.3
+0.1
-0.2
-0.4
-0.0
carbon source
aspen wood chips that have been decomposed by a fungus (C)
-0.1
-0.1
-0.4
-0.2
-0.1
carbon source dark aerobic
PM with succinate aerobic in dark
-0.1
+0.0
-0.4
-0.3
-0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.7
+0.1
-0.2
+0.1
-0.0
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.4
+0.1
+0.0
-0.3
-0.1
carbon source
MDC_bicarb with butyrate and Adenine
-0.2
-0.1
-0.3
+0.2
-0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.4
+0.1
-0.4
-0.0
+0.2
carbon source
MDC_bicarb with butyrate and Adenine
-0.2
+0.0
+0.3
-0.6
+0.0
carbon source
PM with succinate anaerobic with light
-0.3
-0.1
-0.1
+0.2
-0.1
carbon source dark aerobic
PM with succinate aerobic in dark
-0.1
+0.0
-0.6
+0.2
+0.1
sulfur source
NFM with pyruvate
-0.3
-0.1
-0.7
+0.9
-0.1
sulfur source
NFM with pyruvate
-0.8
-0.2
+0.1
+0.4
+0.1
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
+0.0
+0.1
+0.2
-0.6
+0.0
carbon source
4-Hydroxybenzoate (C)
-0.3
-0.1
+0.3
+0.1
-0.2
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
-0.2
-0.1
+0.5
-0.4
-0.1
carbon source
Sebacic (C); anaerobic
-0.1
+0.1
+0.5
-0.3
-0.2
carbon source
Pimelic (C); anaerobic
-0.3
-0.0
+0.2
+0.3
-0.1
carbon source
MDC_bicarb with butyrate
-0.3
-0.1
+0.2
+0.3
-0.0
carbon source
Pimelic (C); anaerobic
-0.1
+0.1
+0.5
+0.3
-0.1
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