Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_024885 and TX73_024890 are separated by 206 nucleotidesTX73_024890 and TX73_024895 overlap by 31 nucleotidesTX73_024895 and TX73_024900 overlap by 4 nucleotidesTX73_024900 and TX73_024905 are separated by 204 nucleotides TX73_024885: TX73_024885 - sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB, at 5,403,796 to 5,405,124 _024885 TX73_024890: TX73_024890 - HAMP domain-containing sensor histidine kinase, at 5,405,331 to 5,407,412 _024890 TX73_024895: TX73_024895 - DUF3369 domain-containing protein, at 5,407,382 to 5,409,121 _024895 TX73_024900: TX73_024900 - response regulator, at 5,409,118 to 5,409,858 _024900 TX73_024905: TX73_024905 - sigma-70 family RNA polymerase sigma factor, at 5,410,063 to 5,410,674 _024905
Group Condition TX73_024885 TX73_024890 TX73_024895 TX73_024900 TX73_024905
stress L-Lactate (C) with 10 mM Sodium Chloride -0.2 -0.1 +0.0 -0.3 -0.3
carbon source acetate trihydrate and Sodium L-Lactate (C) -0.1 -0.0 -0.0 -0.3 -0.5
carbon source acetate trihydrate and Sodium L-Lactate (C) +0.0 -0.1 -0.2 -0.2 -0.4
sulfur source NFM with pyruvate -0.3 +0.2 -0.1 -0.4 -0.3
carbon source PM with Formate and Sodium bicarbonate anaerobic with light -1.4 -1.1 +0.4 +0.8 +0.4
carbon source PM with Formate and Sodium bicarbonate anaerobic with light -1.4 -0.8 +0.4 +0.6 +0.4
carbon source PM with Formate and Sodium bicarbonate anaerobic with light -1.5 -0.9 +0.5 +0.5 +0.5
carbon source MDC_bicarb with butyrate -0.2 -0.1 -0.1 -0.2 -0.1
stress L-Lactate (C) with 10 mM Sodium Chloride -0.2 +0.0 +0.0 -0.1 -0.5
sulfur source Thiamine HCl sulfur source -0.4 -0.3 -0.1 +0.0 -0.0
sulfur source control sulfur source control -0.1 -0.0 -0.1 -0.4 +0.1
sulfur source NFM with succinate -0.6 -0.1 +0.1 +0.1 +0.0
stress L-Lactate (C) with 10 mM Sodium Chloride -0.3 -0.3 +0.1 -0.2 +0.0
carbon source acetate trihydrate and Sodium L-Lactate (C) +0.2 -0.1 -0.1 -0.1 -0.3
carbon source Pimelic (C); anaerobic -0.4 -0.0 -0.0 +0.2 -0.1
carbon source 4-Hydroxybenzoate (C) -0.2 +0.2 +0.0 +0.2 -0.2
stress PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark -0.3 -0.0 +0.2 +0.1 -0.0
stress PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark -0.2 +0.1 +0.2 +0.2 -0.1
carbon source aspen wood chips that have been decomposed by a fungus (C) +0.3 +0.1 -0.1 -0.3 +0.1
carbon source MDC_bicarb with butyrate and Adenine -0.2 -0.3 +0.2 +0.4 +0.2
stress PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark -0.3 +0.1 +0.2 +0.3 +0.0
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -0.0 -0.2 +0.3 +0.5 -0.1
survival starvation expt 4; 14 days; outgrowth in CAAc -0.1 -0.1 +0.2 +0.3 +0.1
stress PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark -0.1 +0.1 +0.2 +0.3 -0.0
sulfur source control Dimethyl sulfide sulfur source -0.1 -0.2 +0.2 +0.4 +0.0
sulfur source Dimethylsulfoniopropionate sulfur source -0.1 -0.1 +0.3 +0.5 -0.1
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark +0.0 -0.1 +0.2 +0.4 +0.1
carbon source MDC_bicarb with butyrate and Adenine -0.4 -0.2 +0.3 +0.5 +0.3
carbon source MDC_bicarb with butyrate and Adenine -0.0 -0.2 +0.4 +0.4 +0.2
carbon source MDC_bicarb with butyrate and Adenine -0.0 -0.3 +0.3 +0.5 +0.4
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TX73_024890
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