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Cofit
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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500 nt
TX73_024740 and TX73_024745 are separated by 832 nucleotides
TX73_024745 and TX73_024750 are separated by 276 nucleotides
TX73_024750 and TX73_024755 are separated by 196 nucleotides
TX73_024755 and TX73_024760 overlap by 4 nucleotides
TX73_024740: TX73_024740 - hypothetical protein, at 5,372,943 to 5,373,476
_024740
TX73_024745: TX73_024745 - hypothetical protein, at 5,374,309 to 5,374,443
_024745
TX73_024750: TX73_024750 - tRNA-Gly, at 5,374,720 to 5,374,793
_024750
TX73_024755: TX73_024755 - methylated-DNA--[protein]-cysteine S-methyltransferase, at 5,374,990 to 5,375,571
_024755
TX73_024760: TX73_024760 - MATE family efflux transporter, at 5,375,568 to 5,377,004
_024760
Group
Condition
TX73
_024740
TX73
_024745
TX73
_024750
TX73
_024755
TX73
_024760
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.4
-0.8
-1.4
-0.2
-0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.5
-0.4
-1.5
-0.3
-0.2
sulfur source
NFM with pyruvate
+0.2
-2.3
-0.3
-0.2
-0.0
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.3
-0.2
-0.8
-0.5
-0.1
sulfur source
sodium isethionate sulfur source
+0.1
-1.9
+0.0
+0.1
-0.1
carbon source
PM with succinate anaerobic with light
-0.2
-0.5
-0.7
-0.2
-0.1
sulfur source
NFM with succinate
-0.2
-0.7
-0.4
-0.1
-0.1
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
-0.1
-0.8
-0.3
-0.2
-0.1
carbon source dark aerobic
PM with butyrate aerobic in dark
+0.1
-1.4
+0.0
-0.2
-0.1
carbon source
PM with succinate anaerobic with light
-0.2
-0.9
-0.2
-0.2
-0.1
sulfur source
Thiamine HCl sulfur source
-0.1
-0.7
-0.5
-0.0
-0.1
sulfur source
Dimethylsulfoniopropionate sulfur source
-0.2
-0.7
-0.4
-0.1
-0.0
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
+0.1
-0.9
-0.1
-0.3
-0.1
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.1
-1.4
+0.1
+0.1
+0.0
carbon source
4-Hydroxybenzoate (C)
+0.0
-0.0
-0.8
-0.2
-0.2
sulfur source
Taurine sulfur source
-0.2
-0.9
+0.1
-0.1
-0.1
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
-0.1
-0.8
-0.2
+0.0
-0.0
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.1
-0.4
-0.9
+0.0
-0.0
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.1
-0.4
-0.7
-0.1
+0.0
carbon source
4-Hydroxybenzoate (C)
+0.0
+0.1
-0.8
-0.1
-0.3
sulfur source
sodium isethionate sulfur source
-0.1
-1.0
+0.2
+0.1
-0.1
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.1
-0.7
-0.4
-0.0
+0.1
carbon source dark aerobic
PM with succinate aerobic in dark
-0.1
-0.9
+0.3
-0.1
-0.1
sulfur source
2-(Methylthio)ethanol sulfur source
+0.1
-0.8
+0.2
-0.1
-0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.2
+0.4
-0.2
-0.4
-0.3
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.4
+0.2
-0.5
+0.2
+0.0
carbon source
4-Hydroxybenzoate (C)
+0.2
+0.5
-0.6
-0.1
-0.4
sulfur source
NFM_No_Mo with acetate trihydrate
-0.2
-0.6
+0.3
+0.2
+0.0
carbon source
4-Aminobutyric (C); anaerobic
-0.1
+0.6
-0.5
+0.0
+0.1
carbon source
Azelaic (C); anaerobic
+0.0
+0.8
-0.3
+0.2
-0.1
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