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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_024000 and TX73_024005 are separated by 15 nucleotides
TX73_024005 and TX73_024010 are separated by 2 nucleotides
TX73_024010 and TX73_024015 are separated by 37 nucleotides
TX73_024015 and TX73_024020 overlap by 1 nucleotides
TX73_024000: TX73_024000 - SIR2 family protein, at 5,206,324 to 5,207,226
_024000
TX73_024005: TX73_024005 - hypothetical protein, at 5,207,242 to 5,207,520
_024005
TX73_024010: TX73_024010 - putative nitrogen fixation protein NifT, at 5,207,523 to 5,207,723
_024010
TX73_024015: TX73_024015 - nitrogen fixation protein NifZ, at 5,207,761 to 5,207,994
_024015
TX73_024020: TX73_024020 - nitrogen fixation protein NifZ, at 5,207,994 to 5,208,293
_024020
Group
Condition
TX73
_024000
TX73
_024005
TX73
_024010
TX73
_024015
TX73
_024020
carbon source dark aerobic
PM with succinate aerobic in dark
-0.6
+0.2
-0.2
-1.5
+0.2
sulfur source
NFM with succinate
-0.4
+0.1
-0.4
+0.2
-1.2
carbon source
PM with succinate anaerobic with light
-0.1
+0.1
-0.7
-0.7
+0.2
sulfur source
NFM with succinate
-0.5
-0.0
-0.4
+0.3
-0.5
sulfur source
NFM_No_Mo with acetate trihydrate
-0.4
+0.2
-0.3
-0.3
+0.1
sulfur source
NFM_No_Mo with acetate trihydrate
-0.2
+0.2
-0.1
+0.2
-0.8
sulfur source
Dimethylsulfoniopropionate sulfur source
+0.0
+0.2
-0.1
-0.9
+0.2
survival
starvation expt 2; 14 days; outgrowth in CAAc
-0.0
-0.1
+0.4
-0.0
-0.8
sulfur source
sodium isethionate sulfur source
-0.3
-0.1
-0.5
-0.0
+0.8
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.2
+0.1
-0.0
-0.7
+0.4
carbon source
4-Hydroxybenzoate (C)
+0.0
+0.3
-0.1
-0.4
+0.4
carbon source dark aerobic
PM with succinate aerobic in dark
-0.3
+0.3
+0.1
-0.4
+0.6
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.3
-0.2
+0.7
-0.9
+0.4
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.3
+0.6
-0.4
+0.5
-0.4
sulfur source
Taurine sulfur source
-0.1
+0.1
-0.3
+0.0
+0.8
stress
L-Lactate (C) with 10 mM Sodium Chloride
+1.0
+0.6
+0.0
-0.2
-0.7
carbon source
MDC_bicarb with butyrate
+0.1
+0.1
-0.3
+0.5
+0.4
sulfur source
Thiamine HCl sulfur source
-0.3
+0.2
-0.1
+0.4
+0.6
sulfur source
sodium isethionate sulfur source
+0.0
+0.2
-0.2
+0.4
+0.4
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
-0.1
-0.0
+0.3
+0.5
+0.3
sulfur source
NFM with pyruvate
+1.2
+0.1
-0.6
-0.1
+0.4
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
+0.1
-0.1
+0.4
+0.8
-0.0
sulfur source
2-(Methylthio)ethanol sulfur source
+0.3
+0.1
+0.3
+0.2
+0.4
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-0.2
+0.5
+0.4
+0.4
+0.5
stress
L-Lactate (C) with 10 mM Sodium Chloride
+1.0
+0.7
+0.2
-0.4
+0.3
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
+0.1
+0.7
+0.7
+0.1
+0.3
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.9
+0.7
+0.6
-0.9
+0.7
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.5
+0.4
+0.5
-0.1
+0.9
sulfur source
NFM with pyruvate
+1.4
+0.2
+0.2
+0.2
+0.5
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.3
+0.6
+0.8
+0.4
+0.8
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