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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_023090 and TX73_023095 are separated by 536 nucleotides
TX73_023095 and TX73_023100 are separated by 207 nucleotides
TX73_023100 and TX73_023105 overlap by 11 nucleotides
TX73_023105 and TX73_023110 overlap by 4 nucleotides
TX73_023090: TX73_023090 - hypothetical protein, at 5,021,843 to 5,022,193
_023090
TX73_023095: TX73_023095 - cache domain-containing protein, at 5,022,730 to 5,024,421
_023095
TX73_023100: TX73_023100 - hypothetical protein, at 5,024,629 to 5,026,224
_023100
TX73_023105: TX73_023105 - hypothetical protein, at 5,026,214 to 5,027,449
_023105
TX73_023110: TX73_023110 - pyridoxal-dependent decarboxylase, at 5,027,446 to 5,028,906
_023110
Group
Condition
TX73
_023090
TX73
_023095
TX73
_023100
TX73
_023105
TX73
_023110
sulfur source
Sulfoacetic sulfur source
-0.1
-0.1
-0.1
-2.4
-1.2
carbon source
4-Hydroxybenzoate (C)
+0.1
-0.1
-0.7
-1.0
-1.8
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.2
+0.3
+0.2
-1.3
-2.7
sulfur source
NFM_No_Mo_Plus_VCl3 with acetate trihydrate
-0.4
-0.0
-0.0
-1.9
-0.8
carbon source
MDC_bicarb with butyrate
+0.3
-0.0
-0.0
+0.0
-3.3
carbon source
MDC_bicarb with butyrate
+0.2
+0.0
+0.1
-1.0
-1.9
carbon source
MDC_bicarb with butyrate
-0.2
+0.1
+0.0
-1.1
-1.4
carbon source
MDC_bicarb with butyrate
+0.2
-0.1
-0.1
-0.8
-1.6
carbon source
Azelaic (C); anaerobic
+0.1
+0.0
+0.0
-0.2
-2.3
survival
starvation expt 2; 7 days; outgrowth in CAAc
-0.1
+0.0
-0.1
-1.0
-1.1
carbon source
Butyric Acid (C); anaerobic
-0.4
+0.0
+0.2
-0.5
-1.6
carbon source
4-Hydroxybenzoate (C)
+0.0
+0.1
-0.3
-0.8
-1.3
carbon source
Sebacic (C); anaerobic
-0.2
+0.0
-0.1
-0.1
-1.9
carbon source
MDC_bicarb with butyrate and Adenine
+0.0
+0.1
-0.1
-1.6
-0.4
carbon source
Azelaic (C); anaerobic
-0.3
+0.1
+0.0
-0.1
-1.6
carbon source
Azelaic (C); anaerobic
-0.0
-0.1
+0.0
-0.3
-1.5
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
+0.1
+0.0
-0.1
-0.9
-1.0
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.1
+0.2
-0.4
-0.4
-1.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.0
+0.4
+0.3
-0.4
-1.9
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.2
-0.1
-0.2
-0.6
-1.0
carbon source
Butyric Acid (C); anaerobic
-0.4
+0.1
+0.2
-0.4
-1.0
sulfur source
NFM_No_Mo with acetate trihydrate
-0.1
+0.2
+0.1
-1.6
+0.0
carbon source
MDC_bicarb with butyrate and Adenine
+0.2
+0.2
-0.1
+0.2
-1.8
sulfur source
Taurine sulfur source
+0.2
+0.2
+0.1
-0.7
-1.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.4
+0.5
+0.1
-0.0
-2.1
stress
Benzoate (C), sodium fluoride stress
+0.2
+0.1
-0.3
+0.5
-0.9
sulfur source
NFM with succinate
-0.1
-0.1
+0.2
-0.6
+1.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
+1.0
+0.2
+0.4
+0.1
-0.6
sulfur source
NFM with pyruvate
+0.3
+0.6
+0.3
+0.5
+0.4
sulfur source
NFM with pyruvate
+0.0
+0.8
+0.2
+0.1
+1.2
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