Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_023065 and TX73_023070 are separated by 79 nucleotidesTX73_023070 and TX73_023075 are separated by 90 nucleotidesTX73_023075 and TX73_023080 overlap by 4 nucleotidesTX73_023080 and TX73_023085 overlap by 4 nucleotides TX73_023065: TX73_023065 - DUF1499 domain-containing protein, at 5,019,053 to 5,019,898 _023065 TX73_023070: TX73_023070 - cysteine rich repeat-containing protein, at 5,019,978 to 5,020,265 _023070 TX73_023075: TX73_023075 - periplasmic heavy metal sensor, at 5,020,356 to 5,020,799 _023075 TX73_023080: TX73_023080 - hypothetical protein, at 5,020,796 to 5,021,215 _023080 TX73_023085: TX73_023085 - RNA polymerase sigma factor, at 5,021,212 to 5,021,838 _023085
Group Condition TX73_023065 TX73_023070 TX73_023075 TX73_023080 TX73_023085
carbon source Citraconic (C); anaerobic -0.0 -0.5 N.D. -0.8 -0.2
carbon source PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM -1.1 -0.4 N.D. +0.1 +0.1
stress PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark +0.1 -0.6 N.D. -0.8 +0.0
sulfur source control sulfur source control +0.4 -1.0 N.D. -0.5 -0.1
sulfur source Thiamine HCl sulfur source +0.2 +0.4 N.D. -1.8 +0.0
monoculture OAcsForEtOH (C); monoculture -0.2 -0.3 N.D. -0.6 +0.1
survival starvation expt 1; 3 days; outgrowth in CAAc +0.3 -0.5 N.D. -0.4 -0.2
carbon source MDC_bicarb with butyrate and Adenine -1.3 +0.6 N.D. -0.2 +0.1
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -0.3 +0.7 N.D. -1.0 -0.0
sulfur source Dimethylsulfoniopropionate sulfur source -0.5 -0.5 N.D. +0.1 +0.3
sulfur source control sulfur source control +0.4 -1.3 N.D. +0.3 -0.0
carbon source PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM +0.2 +0.5 N.D. -1.0 -0.0
stress PM_argon75_N2O25 butyrate and Chloride 0.1 mM +0.6 +0.1 N.D. -0.8 -0.2
carbon source dark aerobic PM with succinate aerobic in dark -0.4 +0.7 N.D. -0.2 -0.3
carbon source PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM +0.1 +0.4 N.D. -0.7 +0.1
sulfur source NFM with succinate +0.4 +0.1 N.D. -0.7 +0.1
carbon source Fumarate (C); anaerobic +0.5 +0.2 N.D. -0.6 -0.2
carbon source Sebacic (C); anaerobic +0.2 -0.5 N.D. +0.5 +0.1
carbon source dark aerobic PM with butyrate aerobic in dark -0.3 +0.9 N.D. +0.0 -0.1
carbon source PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM -0.4 +0.5 N.D. +0.5 +0.1
stress L-Lactate (C) with 10 mM Sodium Chloride +0.2 -0.1 N.D. -0.3 +1.0
carbon source PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM +0.8 +0.4 N.D. +0.0 +0.2
sulfur source NFM with pyruvate +0.2 +0.2 N.D. +0.8 +0.2
carbon source 4-Hydroxybenzoate (C) +0.8 +0.6 N.D. +0.1 -0.0
stress L-Lactate (C) with 10 mM Sodium Chloride +0.7 -0.5 N.D. +0.5 +1.0
carbon source acetate trihydrate and Sodium L-Lactate (C) +1.2 -0.3 N.D. +0.1 +1.1
stress L-Lactate (C) with 10 mM Sodium Chloride +0.6 +0.7 N.D. -0.6 +1.4
sulfur source NFM with pyruvate +0.6 +0.5 N.D. +0.7 +0.5
carbon source acetate trihydrate and Sodium L-Lactate (C) +0.7 +0.5 N.D. +0.2 +0.9
carbon source acetate trihydrate and Sodium L-Lactate (C) +1.1 +0.6 N.D. +0.7 +1.1
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TX73_023065
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TX73_023070
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TX73_023085
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