Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_021870 and TX73_021875 are separated by 25 nucleotidesTX73_021875 and TX73_021880 are separated by 221 nucleotidesTX73_021880 and TX73_021885 are separated by 133 nucleotidesTX73_021885 and TX73_021890 are separated by 375 nucleotides TX73_021870: TX73_021870 - DUF2865 domain-containing protein, at 4,762,530 to 4,763,189 _021870 TX73_021875: TX73_021875 - L,D-transpeptidase, at 4,763,215 to 4,763,982 _021875 TX73_021880: TX73_021880 - AI-2E family transporter, at 4,764,204 to 4,765,319 _021880 TX73_021885: TX73_021885 - hypothetical protein, at 4,765,453 to 4,765,848 _021885 TX73_021890: TX73_021890 - response regulator, at 4,766,224 to 4,767,030 _021890
Group Condition TX73_021870 TX73_021875 TX73_021880 TX73_021885 TX73_021890
carbon source 4-Hydroxybenzoate (C) +0.1 -0.3 +0.1 -0.2 -1.3
sulfur source NFM_No_Mo_Plus_VCl3 with acetate trihydrate -0.2 -0.1 -0.2 -0.0 -0.8
sulfur source NFM_No_Mo_Plus_VCl3 with acetate trihydrate -0.0 -0.1 +0.1 -0.3 -1.1
stress PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark -0.1 +0.0 +0.0 +0.2 -1.4
carbon source PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM +0.1 +0.1 -0.0 +0.0 -1.4
stress PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark +0.2 +0.1 +0.1 +0.1 -1.6
stress PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark -0.0 +0.1 -0.1 +0.2 -1.3
stress PM_N2O butyrate and nitrate 0.1 mM -0.1 -0.1 +0.2 +0.1 -1.2
stress PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark +0.1 +0.1 +0.0 +0.2 -1.3
survival starvation expt 4; 7 days; outgrowth in CAAc -0.0 +0.1 +0.1 +0.1 -1.1
survival starvation expt 3; 14 days; outgrowth in CAAc -0.1 +0.6 +0.1 +0.0 -1.3
survival starvation expt 1; 7 days; outgrowth in CAAc -0.0 +0.0 +0.1 +0.2 -1.0
carbon source PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM +0.1 +0.3 +0.1 +0.0 -1.1
survival starvation expt 1; 14 days; outgrowth in CAAc +0.1 +0.3 -0.1 +0.4 -1.2
survival starvation expt 2; 7 days; outgrowth in CAAc +0.0 +0.3 +0.1 +0.1 -1.0
survival starvation expt 4; 14 days; outgrowth in CAAc -0.1 +0.4 -0.0 +0.1 -0.9
carbon source Butyric Acid (C); anaerobic +0.1 +0.1 +0.0 +0.2 -1.0
survival starvation expt 3; 7 days; outgrowth in CAAc -0.0 +0.3 +0.0 +0.2 -1.0
carbon source L-Leucine (C); anaerobic +0.0 +0.4 +0.3 +0.1 -1.2
survival starvation expt 2; 14 days; outgrowth in CAAc +0.1 +0.4 +0.1 +0.2 -1.0
carbon source Butyric Acid (C); anaerobic +0.1 +0.5 +0.1 -0.0 -0.8
sulfur source NFM with pyruvate -0.7 +0.1 -0.0 -0.2 +0.7
sulfur source Sulfoacetic sulfur source +0.0 +0.3 +0.1 +0.3 -0.7
carbon source MDC_bicarb with butyrate and Adenine +0.4 -0.2 -0.2 -0.0 +0.6
survival starvation expt 2; 3 days; outgrowth in CAAc +0.1 +0.6 +0.2 +0.1 -0.4
carbon source 4-Hydroxybenzoate (C) +0.1 +0.1 +0.1 -0.5 +1.2
sulfur source NFM with pyruvate +0.1 -0.3 +0.1 +0.3 +1.0
carbon source MDC_bicarb with butyrate and Adenine -0.2 +0.5 +0.2 +0.2 +0.7
carbon source Pimelic (C); anaerobic +0.3 +0.6 +0.1 +0.3 +0.4
carbon source Pimelic (C); anaerobic +0.2 +0.9 +0.1 +0.2 +0.3
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