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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_020835 and TX73_020840 overlap by 4 nucleotides
TX73_020840 and TX73_020845 overlap by 8 nucleotides
TX73_020845 and TX73_020850 are separated by 235 nucleotides
TX73_020850 and TX73_020855 are separated by 15 nucleotides
TX73_020835: TX73_020835 - branched-chain amino acid ABC transporter permease, at 4,551,368 to 4,552,312
_020835
TX73_020840: TX73_020840 - ABC transporter ATP-binding protein, at 4,552,309 to 4,553,091
_020840
TX73_020845: TX73_020845 - ABC transporter ATP-binding protein, at 4,553,084 to 4,553,788
_020845
TX73_020850: TX73_020850 - cobalamin-independent methionine synthase II family protein, at 4,554,024 to 4,555,145
_020850
TX73_020855: TX73_020855 - ABC transporter ATP-binding protein, at 4,555,161 to 4,555,877
_020855
Group
Condition
TX73
_020835
TX73
_020840
TX73
_020845
TX73
_020850
TX73
_020855
carbon source
Citraconic (C); anaerobic
-0.2
-0.3
+0.0
+0.0
-0.3
carbon source
Pimelic (C); anaerobic
-0.3
+0.2
-0.0
+0.0
-0.4
carbon source
Pimelic (C); anaerobic
-0.3
+0.2
-0.1
-0.0
-0.4
carbon source
Citraconic (C); anaerobic
+0.1
+0.1
-0.1
-0.1
-0.5
survival
starvation expt 4; 14 days; outgrowth in CAAc
-0.2
+0.2
-0.3
-0.1
-0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.1
+0.4
-0.5
+0.0
-0.3
survival
starvation expt 2; 14 days; outgrowth in CAAc
-0.2
+0.2
-0.1
-0.2
-0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.1
+0.1
-0.3
+0.1
-0.3
carbon source
Butyric Acid (C); anaerobic
-0.3
+0.2
-0.2
+0.1
-0.0
carbon source
Pimelic (C); anaerobic
+0.1
+0.2
+0.0
-0.3
-0.2
stress
Benzoate (C), sodium fluoride stress
-0.4
-0.0
+0.2
-0.1
+0.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.3
+0.1
+0.1
-0.4
-0.2
carbon source
L-Malic (C); anaerobic
-0.2
+0.2
-0.1
+0.2
-0.0
carbon source
PM with succinate and Sodium Formate anaerobic with light
+0.3
-0.1
-0.2
-0.0
+0.0
carbon source
aspen wood chips that have been decomposed by a fungus (C)
-0.2
+0.2
+0.2
-0.2
-0.0
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.0
+0.3
-0.2
+0.2
-0.2
carbon source
4-Hydroxybenzoate (C)
+0.2
-0.0
+0.5
-0.3
-0.2
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.2
+0.0
+0.2
+0.1
-0.3
stress
Benzoate (C), sodium fluoride stress
-0.2
+0.2
+0.3
-0.1
+0.1
carbon source dark aerobic
PM with succinate aerobic in dark
+0.1
-0.2
+0.1
+0.3
+0.0
sulfur source
2-(Methylthio)ethanol sulfur source
-0.2
+0.1
+0.3
+0.1
-0.0
stress
PM_argon75_N2O25 with buyrate and 0.1 mM Chloride; in dark
+0.2
-0.1
+0.1
-0.1
+0.2
carbon source dark aerobic
PM with succinate aerobic in dark
-0.0
-0.0
+0.3
-0.1
+0.3
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.1
+0.3
+0.2
-0.1
+0.1
carbon source
MDC_bicarb with butyrate
+0.2
-0.0
+0.4
+0.1
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.3
+0.1
+0.3
+0.0
-0.0
sulfur source
NFM with pyruvate
+0.1
+0.2
+0.4
-0.2
+0.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.6
+0.2
+0.2
-0.0
-0.2
sulfur source
NFM with pyruvate
+0.1
+0.3
+0.3
+0.0
+0.1
sulfur source
2-(Methylthio)ethanol sulfur source
+0.3
+0.1
+0.3
+0.0
+0.2
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