Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_020775 and TX73_020780 are separated by 371 nucleotidesTX73_020780 and TX73_020785 are separated by 162 nucleotidesTX73_020785 and TX73_020790 are separated by 117 nucleotidesTX73_020790 and TX73_020795 are separated by 188 nucleotides TX73_020775: TX73_020775 - response regulator, at 4,534,392 to 4,534,769 _020775 TX73_020780: TX73_020780 - S8 family serine peptidase, at 4,535,141 to 4,537,246 _020780 TX73_020785: TX73_020785 - PaaI family thioesterase, at 4,537,409 to 4,537,864 _020785 TX73_020790: TX73_020790 - YafY family protein, at 4,537,982 to 4,538,668 _020790 TX73_020795: TX73_020795 - ABC-F family ATP-binding cassette domain-containing protein, at 4,538,857 to 4,540,455 _020795
Group Condition TX73_020775 TX73_020780 TX73_020785 TX73_020790 TX73_020795
carbon source acetate trihydrate and Sodium L-Lactate (C) -0.7 +0.1 -0.1 -0.4 +0.3
stress L-Lactate (C) with 10 mM Sodium Chloride -0.6 +0.2 -0.5 -0.1 +0.1
stress L-Lactate (C) with 10 mM Sodium Chloride +0.2 -0.2 -0.3 -0.6 +0.2
sulfur source control sulfur source control -0.3 +0.1 -0.4 -0.1 -0.1
carbon source MDC_bicarb with butyrate and Adenine -0.5 +0.0 -0.3 +0.0 +0.1
carbon source acetate trihydrate and Sodium L-Lactate (C) -0.2 +0.3 -0.5 -0.2 +0.0
carbon source L-Malic (C); anaerobic -0.3 +0.2 -0.2 -0.2 -0.0
carbon source acetate trihydrate and Sodium L-Lactate (C) -0.6 +0.1 -0.1 -0.1 +0.3
survival starvation expt 1; 14 days; outgrowth in CAAc -0.4 +0.1 -0.0 -0.1 -0.1
survival starvation expt 4; 14 days; outgrowth in CAAc -0.2 +0.1 +0.1 -0.4 -0.1
sulfur source Taurine sulfur source -0.5 -0.1 -0.2 +0.2 +0.2
carbon source MDC_bicarb with butyrate and Adenine -0.6 +0.1 -0.1 +0.2 +0.1
sulfur source NFM with pyruvate -0.6 -0.1 -0.3 +0.4 +0.4
stress L-Lactate (C) with 10 mM Sodium Chloride +0.1 +0.2 -0.5 -0.1 +0.2
sulfur source sodium isethionate sulfur source -0.4 +0.0 -0.1 +0.1 +0.2
carbon source PM with Formate and Sodium bicarbonate anaerobic with light -0.5 +0.2 +0.1 +0.0 +0.2
sulfur source Thiamine HCl sulfur source -0.4 +0.1 +0.1 +0.1 +0.2
carbon source PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM -0.4 +0.2 +0.0 +0.2 +0.1
carbon source Pimelic (C); anaerobic +0.3 +0.1 -0.1 -0.2 -0.0
carbon source dark aerobic PM with butyrate aerobic in dark -0.4 -0.1 +0.1 +0.3 +0.2
carbon source MDC_bicarb with butyrate and Adenine +0.5 +0.1 -0.1 -0.0 -0.3
stress PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark +0.2 +0.1 -0.2 +0.2 +0.1
stress PM_N2O butyrate and nitrate 0.1 mM +0.5 -0.0 -0.3 +0.2 -0.1
stress PM_argon75_N2O25 butyrate and Chloride 0.1 mM +0.4 -0.0 -0.1 -0.0 +0.1
carbon source PM with succinate and Sodium Formate anaerobic with light +0.5 -0.0 -0.2 -0.0 +0.1
stress PM_argon75_N2O25 with buyrate and 0.1 mM Chloride; in dark +0.3 -0.1 +0.2 -0.1 +0.1
carbon source MDC_bicarb with butyrate and Adenine +0.1 +0.1 +0.3 +0.3 -0.1
coculture dpurH coculture with Glucose and NaCl and NH4Cl +0.5 +0.0 -0.1 +0.1 +0.1
carbon source 4-Hydroxybenzoate (C) +0.4 +0.1 +0.1 +0.2 +0.1
carbon source aspen wood chips that have been decomposed by a fungus (C) +0.7 -0.0 -0.0 +0.3 -0.0
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