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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_020775 and TX73_020780 are separated by 371 nucleotides
TX73_020780 and TX73_020785 are separated by 162 nucleotides
TX73_020785 and TX73_020790 are separated by 117 nucleotides
TX73_020790 and TX73_020795 are separated by 188 nucleotides
TX73_020775: TX73_020775 - response regulator, at 4,534,392 to 4,534,769
_020775
TX73_020780: TX73_020780 - S8 family serine peptidase, at 4,535,141 to 4,537,246
_020780
TX73_020785: TX73_020785 - PaaI family thioesterase, at 4,537,409 to 4,537,864
_020785
TX73_020790: TX73_020790 - YafY family protein, at 4,537,982 to 4,538,668
_020790
TX73_020795: TX73_020795 - ABC-F family ATP-binding cassette domain-containing protein, at 4,538,857 to 4,540,455
_020795
Group
Condition
TX73
_020775
TX73
_020780
TX73
_020785
TX73
_020790
TX73
_020795
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.7
+0.1
-0.1
-0.4
+0.3
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.6
+0.2
-0.5
-0.1
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.2
-0.2
-0.3
-0.6
+0.2
sulfur source control
sulfur source control
-0.3
+0.1
-0.4
-0.1
-0.1
carbon source
MDC_bicarb with butyrate and Adenine
-0.5
+0.0
-0.3
+0.0
+0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.2
+0.3
-0.5
-0.2
+0.0
carbon source
L-Malic (C); anaerobic
-0.3
+0.2
-0.2
-0.2
-0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.6
+0.1
-0.1
-0.1
+0.3
survival
starvation expt 1; 14 days; outgrowth in CAAc
-0.4
+0.1
-0.0
-0.1
-0.1
survival
starvation expt 4; 14 days; outgrowth in CAAc
-0.2
+0.1
+0.1
-0.4
-0.1
sulfur source
Taurine sulfur source
-0.5
-0.1
-0.2
+0.2
+0.2
carbon source
MDC_bicarb with butyrate and Adenine
-0.6
+0.1
-0.1
+0.2
+0.1
sulfur source
NFM with pyruvate
-0.6
-0.1
-0.3
+0.4
+0.4
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.1
+0.2
-0.5
-0.1
+0.2
sulfur source
sodium isethionate sulfur source
-0.4
+0.0
-0.1
+0.1
+0.2
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.5
+0.2
+0.1
+0.0
+0.2
sulfur source
Thiamine HCl sulfur source
-0.4
+0.1
+0.1
+0.1
+0.2
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
-0.4
+0.2
+0.0
+0.2
+0.1
carbon source
Pimelic (C); anaerobic
+0.3
+0.1
-0.1
-0.2
-0.0
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.4
-0.1
+0.1
+0.3
+0.2
carbon source
MDC_bicarb with butyrate and Adenine
+0.5
+0.1
-0.1
-0.0
-0.3
stress
PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark
+0.2
+0.1
-0.2
+0.2
+0.1
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.5
-0.0
-0.3
+0.2
-0.1
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.4
-0.0
-0.1
-0.0
+0.1
carbon source
PM with succinate and Sodium Formate anaerobic with light
+0.5
-0.0
-0.2
-0.0
+0.1
stress
PM_argon75_N2O25 with buyrate and 0.1 mM Chloride; in dark
+0.3
-0.1
+0.2
-0.1
+0.1
carbon source
MDC_bicarb with butyrate and Adenine
+0.1
+0.1
+0.3
+0.3
-0.1
coculture
dpurH coculture with Glucose and NaCl and NH4Cl
+0.5
+0.0
-0.1
+0.1
+0.1
carbon source
4-Hydroxybenzoate (C)
+0.4
+0.1
+0.1
+0.2
+0.1
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.7
-0.0
-0.0
+0.3
-0.0
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