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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_020405 and TX73_020410 are separated by 140 nucleotides
TX73_020410 and TX73_020415 are separated by 43 nucleotides
TX73_020415 and TX73_020420 are separated by 21 nucleotides
TX73_020420 and TX73_020425 are separated by 115 nucleotides
TX73_020405: TX73_020405 - FAD-binding oxidoreductase, at 4,448,787 to 4,450,247
_020405
TX73_020410: TX73_020410 - histidine phosphatase family protein, at 4,450,388 to 4,450,918
_020410
TX73_020415: TX73_020415 - universal stress protein, at 4,450,962 to 4,451,393
_020415
TX73_020420: TX73_020420 - hypothetical protein, at 4,451,415 to 4,452,044
_020420
TX73_020425: TX73_020425 - hypothetical protein, at 4,452,160 to 4,452,600
_020425
Group
Condition
TX73
_020405
TX73
_020410
TX73
_020415
TX73
_020420
TX73
_020425
stress
Benzoate (C), sodium fluoride stress
-0.0
-2.8
-0.4
-0.1
+0.1
stress
Benzoate (C), sodium fluoride stress
+0.1
-3.0
-0.1
-0.1
-0.2
stress
Benzoate (C), sodium fluoride stress
+0.2
-3.0
+0.0
-0.1
+0.0
carbon source
PM with succinate anaerobic with light
+0.2
-1.8
-0.1
-0.1
-0.1
carbon source
PM with succinate anaerobic with light
+0.3
-1.4
+0.0
-0.2
-0.1
sulfur source
2-(Methylthio)ethanol sulfur source
+0.2
-1.5
+0.3
-0.1
-0.1
carbon source
PM with succinate and Sodium Formate anaerobic with light
+0.2
-1.2
+0.2
-0.1
-0.2
carbon source
MDC_bicarb with butyrate
-0.4
+1.4
-0.3
-0.1
-0.2
carbon source
MDC_bicarb with butyrate and Adenine
-0.3
+1.3
+0.1
-0.2
-0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.2
+1.7
-0.5
-0.1
-0.2
carbon source
MDC_bicarb with butyrate
-0.5
+2.0
-0.3
-0.1
-0.3
carbon source
MDC_bicarb with butyrate
-0.5
+2.0
-0.0
-0.2
-0.4
carbon source
MDC_bicarb with butyrate
-0.5
+2.3
-0.3
-0.1
-0.3
carbon source
MDC_bicarb with butyrate and Adenine
-0.1
+1.4
+0.2
+0.0
-0.4
carbon source
Butyric Acid (C); anaerobic
-0.4
+1.6
+0.0
+0.1
-0.1
carbon source
MDC_bicarb with butyrate and Adenine
-0.3
+1.8
-0.1
+0.0
+0.0
carbon source
Butyric Acid (C); anaerobic
-0.2
+1.6
-0.0
+0.1
+0.1
carbon source
Butyric Acid (C); anaerobic
-0.3
+1.8
+0.1
+0.1
+0.1
carbon source
Butyric Acid (C); anaerobic
-0.3
+1.9
+0.1
+0.2
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.1
+2.8
-0.3
-0.1
-0.0
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.1
+3.4
-0.4
+0.0
-0.1
sulfur source
NFM with pyruvate
+0.3
+2.3
-0.0
+0.6
-0.0
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
-0.1
+4.1
-0.1
-0.1
-0.2
sulfur source
NFM with pyruvate
+0.1
+3.6
-0.3
+0.6
-0.2
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
+0.0
+3.8
-0.0
+0.1
-0.1
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
-0.0
+3.9
+0.0
-0.0
-0.0
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
-0.1
+4.4
-0.2
+0.1
-0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.4
+5.7
-0.4
+0.0
-0.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.6
+5.6
-0.4
-0.1
-0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.5
+5.7
-0.5
+0.0
-0.0
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