Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_019445 and TX73_019450 are separated by 183 nucleotidesTX73_019450 and TX73_019455 are separated by 40 nucleotidesTX73_019455 and TX73_019460 are separated by 245 nucleotidesTX73_019460 and TX73_019465 are separated by 20 nucleotides TX73_019445: TX73_019445 - aldolase/citrate lyase family protein, at 4,251,015 to 4,251,791 _019445 TX73_019450: TX73_019450 - malate/lactate/ureidoglycolate dehydrogenase, at 4,251,975 to 4,253,060 _019450 TX73_019455: TX73_019455 - homoprotocatechuate degradation operon regulator HpaR, at 4,253,101 to 4,253,640 _019455 TX73_019460: TX73_019460 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 4,253,886 to 4,254,692 _019460 TX73_019465: TX73_019465 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 4,254,713 to 4,255,111 _019465
Group Condition TX73_019445 TX73_019450 TX73_019455 TX73_019460 TX73_019465
carbon source Citraconic (C); anaerobic -0.2 -0.2 -0.3 -0.1 -0.6
carbon source 4-Hydroxybenzoate (C) +0.2 +0.1 -1.1 -0.2 -0.4
carbon source L-Leucine (C); anaerobic +0.3 -0.2 -0.6 -0.4 -0.4
carbon source aspen wood chips that have been decomposed by a fungus (C) -0.1 -0.0 -0.7 -0.2 -0.1
survival starvation expt 1; 7 days; outgrowth in CAAc -0.1 -0.2 -0.0 -0.3 -0.5
carbon source aspen wood chips that have been decomposed by a fungus (C) -0.4 -0.3 -0.2 -0.3 -0.0
carbon source Fumarate (C); anaerobic -0.3 -0.2 -0.3 -0.1 -0.3
carbon source dark aerobic PM with butyrate aerobic in dark +0.0 +0.1 -0.2 -0.2 -0.7
stress Benzoate (C), sodium fluoride stress +0.0 +0.2 +0.2 -0.1 -1.0
carbon source Citraconic (C); anaerobic +0.2 -0.2 -0.5 -0.3 +0.2
stress PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark +0.3 -0.0 -0.6 -0.1 -0.1
carbon source dark aerobic PM with succinate aerobic in dark -0.0 +0.1 -0.5 +0.2 -0.3
carbon source Fumarate (C); anaerobic +0.3 -0.3 -0.4 -0.2 +0.2
carbon source dark aerobic PM with succinate aerobic in dark +0.2 +0.2 -0.6 -0.1 -0.1
survival starvation expt 1; 14 days; outgrowth in CAAc -0.3 -0.2 +0.6 -0.2 -0.3
stress PM_argon75_N2O25 butyrate and Chloride 0.1 mM +0.3 +0.1 -0.5 -0.2 -0.0
stress PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark +0.0 +0.1 -0.7 +0.4 -0.2
carbon source PM with succinate and Sodium Formate anaerobic with light +0.1 +0.1 -0.6 -0.1 +0.2
sulfur source NFM with pyruvate +0.7 +0.1 -0.3 -0.7 +0.2
sulfur source Dimethylsulfoniopropionate sulfur source -0.2 +0.2 -0.4 +0.2 +0.3
sulfur source sodium isethionate sulfur source +0.3 -0.1 +0.0 -0.4 +0.3
carbon source acetate trihydrate and Sodium L-Lactate (C) +0.5 +0.1 -0.4 -0.2 +0.1
carbon source Butyric Acid (C); anaerobic +0.1 -0.2 +0.4 +0.2 -0.1
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark +0.1 +0.0 -0.3 +0.2 +0.5
stress L-Lactate (C) with 10 mM Sodium Chloride +0.3 +0.0 +0.3 -0.5 +0.4
carbon source acetate trihydrate and Sodium L-Lactate (C) +0.8 -0.0 -0.1 -0.3 +0.1
carbon source dark aerobic PM with succinate aerobic in dark -0.0 +0.1 -0.3 +0.5 +0.3
sulfur source NFM with pyruvate +0.3 -0.0 -0.7 +0.2 +0.8
stress L-Lactate (C) with 10 mM Sodium Chloride +0.7 -0.1 +0.4 -0.1 -0.2
carbon source dark aerobic PM with succinate aerobic in dark +0.4 +0.2 -0.3 -0.0 +0.4
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