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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_019445 and TX73_019450 are separated by 183 nucleotides
TX73_019450 and TX73_019455 are separated by 40 nucleotides
TX73_019455 and TX73_019460 are separated by 245 nucleotides
TX73_019460 and TX73_019465 are separated by 20 nucleotides
TX73_019445: TX73_019445 - aldolase/citrate lyase family protein, at 4,251,015 to 4,251,791
_019445
TX73_019450: TX73_019450 - malate/lactate/ureidoglycolate dehydrogenase, at 4,251,975 to 4,253,060
_019450
TX73_019455: TX73_019455 - homoprotocatechuate degradation operon regulator HpaR, at 4,253,101 to 4,253,640
_019455
TX73_019460: TX73_019460 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 4,253,886 to 4,254,692
_019460
TX73_019465: TX73_019465 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 4,254,713 to 4,255,111
_019465
Group
Condition
TX73
_019445
TX73
_019450
TX73
_019455
TX73
_019460
TX73
_019465
carbon source
Citraconic (C); anaerobic
-0.2
-0.2
-0.3
-0.1
-0.6
carbon source
4-Hydroxybenzoate (C)
+0.2
+0.1
-1.1
-0.2
-0.4
carbon source
L-Leucine (C); anaerobic
+0.3
-0.2
-0.6
-0.4
-0.4
carbon source
aspen wood chips that have been decomposed by a fungus (C)
-0.1
-0.0
-0.7
-0.2
-0.1
survival
starvation expt 1; 7 days; outgrowth in CAAc
-0.1
-0.2
-0.0
-0.3
-0.5
carbon source
aspen wood chips that have been decomposed by a fungus (C)
-0.4
-0.3
-0.2
-0.3
-0.0
carbon source
Fumarate (C); anaerobic
-0.3
-0.2
-0.3
-0.1
-0.3
carbon source dark aerobic
PM with butyrate aerobic in dark
+0.0
+0.1
-0.2
-0.2
-0.7
stress
Benzoate (C), sodium fluoride stress
+0.0
+0.2
+0.2
-0.1
-1.0
carbon source
Citraconic (C); anaerobic
+0.2
-0.2
-0.5
-0.3
+0.2
stress
PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
+0.3
-0.0
-0.6
-0.1
-0.1
carbon source dark aerobic
PM with succinate aerobic in dark
-0.0
+0.1
-0.5
+0.2
-0.3
carbon source
Fumarate (C); anaerobic
+0.3
-0.3
-0.4
-0.2
+0.2
carbon source dark aerobic
PM with succinate aerobic in dark
+0.2
+0.2
-0.6
-0.1
-0.1
survival
starvation expt 1; 14 days; outgrowth in CAAc
-0.3
-0.2
+0.6
-0.2
-0.3
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.3
+0.1
-0.5
-0.2
-0.0
stress
PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
+0.0
+0.1
-0.7
+0.4
-0.2
carbon source
PM with succinate and Sodium Formate anaerobic with light
+0.1
+0.1
-0.6
-0.1
+0.2
sulfur source
NFM with pyruvate
+0.7
+0.1
-0.3
-0.7
+0.2
sulfur source
Dimethylsulfoniopropionate sulfur source
-0.2
+0.2
-0.4
+0.2
+0.3
sulfur source
sodium isethionate sulfur source
+0.3
-0.1
+0.0
-0.4
+0.3
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.5
+0.1
-0.4
-0.2
+0.1
carbon source
Butyric Acid (C); anaerobic
+0.1
-0.2
+0.4
+0.2
-0.1
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
+0.1
+0.0
-0.3
+0.2
+0.5
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.3
+0.0
+0.3
-0.5
+0.4
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.8
-0.0
-0.1
-0.3
+0.1
carbon source dark aerobic
PM with succinate aerobic in dark
-0.0
+0.1
-0.3
+0.5
+0.3
sulfur source
NFM with pyruvate
+0.3
-0.0
-0.7
+0.2
+0.8
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.7
-0.1
+0.4
-0.1
-0.2
carbon source dark aerobic
PM with succinate aerobic in dark
+0.4
+0.2
-0.3
-0.0
+0.4
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