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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_018485 and TX73_018490 are separated by 156 nucleotides
TX73_018490 and TX73_018495 are separated by 94 nucleotides
TX73_018495 and TX73_018500 are separated by 287 nucleotides
TX73_018500 and TX73_018505 are separated by 167 nucleotides
TX73_018485: TX73_018485 - hypothetical protein, at 4,031,945 to 4,032,283
_018485
TX73_018490: TX73_018490 - DUF4403 family protein, at 4,032,440 to 4,034,002
_018490
TX73_018495: TX73_018495 - PRC-barrel domain-containing protein, at 4,034,097 to 4,034,636
_018495
TX73_018500: TX73_018500 - hypothetical protein, at 4,034,924 to 4,035,466
_018500
TX73_018505: TX73_018505 - response regulator, at 4,035,634 to 4,036,356
_018505
Group
Condition
TX73
_018485
TX73
_018490
TX73
_018495
TX73
_018500
TX73
_018505
sulfur source
NFM with pyruvate
-0.5
+0.5
+0.0
-0.1
-0.3
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.5
+0.4
-0.2
+0.2
-0.3
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.7
+0.2
+0.1
+0.3
-0.1
sulfur source
Dimethylsulfoniopropionate sulfur source
-0.5
+0.4
-0.0
-0.1
+0.1
survival outgrowth control
starvation outgrowth control in CAAc
+0.1
+0.2
-0.4
+0.2
-0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.2
+0.4
+0.3
+0.1
-0.4
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.4
+0.2
+0.3
-0.0
+0.1
carbon source
4-Aminobutyric (C); anaerobic
+0.1
+0.3
-0.3
+0.2
-0.1
carbon source
Fumarate (C); anaerobic
-0.1
+0.3
-0.1
+0.3
-0.1
sulfur source
sodium isethionate sulfur source
-0.4
+0.1
+0.5
-0.1
+0.1
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
+0.2
-0.2
-0.1
+0.1
+0.3
carbon source
Azelaic (C); anaerobic
-0.1
+0.2
-0.2
+0.3
+0.2
carbon source
MDC_bicarb with butyrate
+0.2
+0.2
-0.2
+0.3
-0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.5
+0.4
+0.1
+0.5
-0.1
carbon source
4-Aminobutyric (C); anaerobic
+0.2
+0.3
-0.2
-0.0
+0.1
carbon source dark aerobic
PM with succinate aerobic in dark
-0.2
-0.0
+0.3
+0.2
+0.3
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.1
+0.5
-0.2
+0.5
-0.2
carbon source
PM with succinate anaerobic with light
+0.4
+0.2
-0.1
-0.2
+0.1
sulfur source
Taurine sulfur source
-0.3
+0.2
+0.4
+0.0
+0.1
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
+0.5
-0.3
+0.3
-0.1
+0.1
carbon source
Citraconic (C); anaerobic
-0.2
+0.3
+0.0
+0.2
+0.1
carbon source
Citraconic (C); anaerobic
+0.0
+0.3
-0.1
+0.3
+0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.4
+0.7
+0.1
+0.5
-0.2
carbon source
L-Leucine (C); anaerobic
-0.1
+0.3
+0.2
+0.2
+0.2
carbon source
MDC_bicarb with butyrate and Adenine
+0.3
+0.0
+0.2
+0.4
-0.3
carbon source
Citraconic (C); anaerobic
-0.0
+0.3
-0.1
+0.3
+0.2
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.1
+0.5
-0.1
+0.1
+0.1
stress
PM_N2O butyrate and nitrate 0.1 mM
-0.0
+0.4
+0.2
+0.1
+0.1
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.1
-0.0
+0.2
+0.2
+0.5
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.2
+0.3
+0.3
+0.1
+0.2
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TX73_018495
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TX73_018505
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