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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_018440 and TX73_018445 overlap by 4 nucleotides
TX73_018445 and TX73_018450 are separated by 141 nucleotides
TX73_018450 and TX73_018455 are separated by 237 nucleotides
TX73_018455 and TX73_018460 overlap by 11 nucleotides
TX73_018440: TX73_018440 - permease, at 4,024,303 to 4,025,352
_018440
TX73_018445: TX73_018445 - metalloregulator ArsR/SmtB family transcription factor, at 4,025,349 to 4,025,648
_018445
TX73_018450: TX73_018450 - sulfite exporter TauE/SafE family protein, at 4,025,790 to 4,026,575
_018450
TX73_018455: TX73_018455 - metalloregulator ArsR/SmtB family transcription factor, at 4,026,813 to 4,027,169
_018455
TX73_018460: TX73_018460 - arsenite methyltransferase, at 4,027,159 to 4,028,010
_018460
Group
Condition
TX73
_018440
TX73
_018445
TX73
_018450
TX73
_018455
TX73
_018460
sulfur source
Dimethylsulfoniopropionate sulfur source
+0.0
-0.7
-0.0
-0.0
-0.1
sulfur source
Taurine sulfur source
-0.1
-0.5
+0.0
-0.2
+0.0
sulfur source
NFM_No_Mo with acetate trihydrate
+0.0
-0.6
+0.2
-0.2
-0.0
sulfur source control
sulfur source control
+0.1
-0.5
+0.1
+0.0
-0.1
sulfur source
sodium isethionate sulfur source
-0.0
+0.3
-0.2
-0.4
-0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.2
-0.6
-0.1
-0.0
+0.3
sulfur source
NFM with pyruvate
+0.1
-0.2
-0.3
-0.3
+0.3
sulfur source
NFM with pyruvate
-0.4
+0.1
+0.1
-0.4
+0.3
carbon source
4-Hydroxybenzoate (C)
+0.3
-0.6
-0.1
+0.3
-0.1
carbon source
MDC_bicarb with butyrate and Adenine
+0.2
-0.2
+0.1
+0.2
-0.3
carbon source dark aerobic
PM with succinate aerobic in dark
+0.2
+0.2
-0.2
-0.3
+0.1
sulfur source
Sulfoacetic sulfur source
+0.1
-0.3
-0.1
+0.2
+0.1
carbon source
MDC_bicarb with butyrate and Adenine
+0.2
+0.3
-0.1
-0.2
-0.1
carbon source dark aerobic
PM with butyrate aerobic in dark
+0.0
+0.4
-0.2
+0.1
-0.1
carbon source
PM with succinate and Sodium Formate anaerobic with light
+0.1
-0.3
+0.2
+0.2
+0.1
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
+0.3
+0.2
+0.1
-0.0
-0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.2
-0.4
+0.1
+0.3
+0.4
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.1
+0.2
+0.3
+0.1
-0.1
carbon source
Azelaic (C); anaerobic
+0.1
+0.2
+0.1
+0.3
+0.1
carbon source
PM with succinate anaerobic with light
+0.1
+0.5
+0.1
+0.1
+0.1
carbon source
Citraconic (C); anaerobic
-0.0
+0.5
+0.1
+0.1
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.2
-0.0
+0.1
+0.2
+0.4
carbon source
Citraconic (C); anaerobic
-0.0
+0.2
+0.2
+0.3
+0.2
carbon source
Pimelic (C); anaerobic
+0.0
+0.4
+0.2
+0.4
+0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.4
+0.2
+0.0
+0.1
+0.3
survival
starvation expt 4; 14 days; outgrowth in CAAc
+0.1
+0.3
+0.2
+0.3
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.4
-0.1
+0.1
+0.2
+0.4
carbon source
L-Leucine (C); anaerobic
+0.2
+0.3
+0.2
+0.2
+0.2
survival
starvation expt 1; 14 days; outgrowth in CAAc
+0.1
+0.4
+0.2
+0.3
+0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.4
+0.3
+0.2
+0.2
+0.3
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