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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_017705 and TX73_017710 are separated by 10 nucleotides
TX73_017710 and TX73_017715 are separated by 31 nucleotides
TX73_017715 and TX73_017720 are separated by 59 nucleotides
TX73_017720 and TX73_017725 are separated by 190 nucleotides
TX73_017705: TX73_017705 - hypothetical protein, at 3,867,538 to 3,867,727
_017705
TX73_017710: TX73_017710 - hypothetical protein, at 3,867,738 to 3,867,905
_017710
TX73_017715: TX73_017715 - gamma carbonic anhydrase family protein, at 3,867,937 to 3,868,467
_017715
TX73_017720: TX73_017720 - hypothetical protein, at 3,868,527 to 3,868,859
_017720
TX73_017725: TX73_017725 - hypothetical protein, at 3,869,050 to 3,869,757
_017725
Group
Condition
TX73
_017705
TX73
_017710
TX73
_017715
TX73
_017720
TX73
_017725
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-0.1
-0.1
-1.9
-0.5
+0.1
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
+0.3
-0.4
-1.8
-0.2
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.2
+0.4
-1.7
+0.1
-0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.2
+0.3
-1.4
-0.2
+0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.3
+0.6
-1.5
+0.1
+0.0
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
-0.1
+0.1
-0.2
-0.3
-0.1
carbon source
PM with succinate and Sodium Formate anaerobic with light
+0.1
+0.1
-0.6
+0.0
-0.1
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.1
+0.2
+0.1
-0.3
-0.2
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.0
+0.1
+0.1
-0.2
-0.2
carbon source
PM with succinate and Sodium Formate anaerobic with light
+0.1
+0.2
-0.6
-0.1
+0.0
carbon source
PM with succinate and Sodium Formate anaerobic with light
-0.3
+0.5
-0.5
+0.0
+0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.3
+0.5
+0.0
-0.5
+0.0
carbon source dark aerobic
PM with succinate aerobic in dark
-0.3
-0.1
-0.1
+0.2
+0.1
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
-0.3
+0.2
+0.0
-0.1
+0.1
sulfur source
Thiamine HCl sulfur source
-0.3
+0.2
+0.1
+0.2
-0.1
sulfur source
NFM_No_Mo with acetate trihydrate
-0.3
+0.3
-0.1
-0.0
+0.1
sulfur source control
sulfur source control
-0.1
-0.0
+0.3
-0.2
+0.2
sulfur source
sodium isethionate sulfur source
+0.1
-0.3
+0.1
+0.2
+0.1
carbon source
Butyric Acid (C); anaerobic
+0.3
+0.2
-0.1
-0.2
-0.1
stress
Benzoate (C), sodium fluoride stress
+0.0
+0.4
+0.1
-0.1
-0.1
carbon source
Citraconic (C); anaerobic
+0.1
+0.4
-0.1
-0.1
-0.1
sulfur source
NFM with pyruvate
-0.3
+0.5
+0.2
-0.3
+0.3
carbon source
L-Malic (C); anaerobic
+0.1
+0.4
+0.1
+0.0
-0.1
carbon source
Sebacic (C); anaerobic
-0.1
+0.6
+0.0
+0.2
-0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.0
+0.5
+0.0
-0.2
+0.3
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.2
+0.6
+0.3
-0.0
+0.2
sulfur source
NFM with pyruvate
-0.1
+0.5
+0.2
-0.0
+0.5
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.1
+0.0
+2.0
+0.1
+0.0
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.1
+0.0
+1.9
+0.1
+0.1
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.1
+0.1
+2.0
+0.1
+0.1
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TX73_017710
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TX73_017715
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TX73_017725
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