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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_017560 and TX73_017565 are separated by 1 nucleotides
TX73_017565 and TX73_017570 are separated by 191 nucleotides
TX73_017570 and TX73_017575 are separated by 277 nucleotides
TX73_017575 and TX73_017580 are separated by 100 nucleotides
TX73_017560: TX73_017560 - hypothetical protein, at 3,836,527 to 3,837,654
_017560
TX73_017565: TX73_017565 - hypothetical protein, at 3,837,656 to 3,838,075
_017565
TX73_017570: TX73_017570 - arsenic transporter, at 3,838,267 to 3,839,520
_017570
TX73_017575: TX73_017575 - cold-shock protein, at 3,839,798 to 3,840,007
_017575
TX73_017580: TX73_017580 - transcriptional regulator, at 3,840,108 to 3,840,356
_017580
Group
Condition
TX73
_017560
TX73
_017565
TX73
_017570
TX73
_017575
TX73
_017580
sulfur source
sodium isethionate sulfur source
-0.1
-0.6
+0.1
-0.6
-1.0
carbon source dark aerobic
PM with succinate aerobic in dark
-0.0
-0.5
+0.2
-0.4
-0.8
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.3
+0.0
+0.1
+0.4
-1.6
sulfur source
NFM with pyruvate
-0.2
+0.3
-0.1
-0.8
-0.2
carbon source
MDC_bicarb with butyrate and Adenine
+0.1
-0.3
-0.0
-0.6
-0.0
carbon source dark aerobic
PM with butyrate aerobic in dark
+0.1
-0.1
+0.0
-0.2
-0.6
carbon source
PM with succinate anaerobic with light
-0.1
-0.2
+0.2
-0.6
-0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.1
-0.3
+0.4
+0.0
-0.7
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.2
-0.1
+0.3
-0.1
-0.5
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.1
-0.2
+0.1
-0.4
-0.1
sulfur source
Taurine sulfur source
-0.2
+0.2
+0.0
+0.2
-0.5
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
-0.3
-0.3
-0.0
+0.0
+0.4
sulfur source
NFM with succinate
+0.1
-0.0
+0.1
+0.4
-0.4
stress
PM_argon75_N2O25 butyrate and nitrate 0.1 mM
+0.1
+0.2
+0.1
-0.4
+0.1
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
+0.2
+0.2
+0.1
-0.2
-0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.1
-0.1
+0.0
+0.9
-0.3
carbon source
MDC_bicarb with butyrate
-0.2
+0.4
+0.1
+0.2
+0.0
carbon source dark aerobic
PM with succinate aerobic in dark
-0.0
+0.2
+0.1
-0.1
+0.5
survival
starvation expt 1; 14 days; outgrowth in CAAc
+0.1
+0.2
+0.1
+0.5
-0.2
carbon source
Citraconic (C); anaerobic
+0.1
+0.2
-0.2
+0.4
+0.2
carbon source
PM with succinate and Sodium Formate anaerobic with light
+0.3
+0.1
+0.2
-0.1
+0.3
survival outgrowth control
starvation outgrowth control in CAAc
-0.0
+0.1
-0.0
+0.4
+0.4
survival
starvation expt 2; 14 days; outgrowth in CAAc
+0.1
+0.3
+0.1
+0.1
+0.3
survival
starvation expt 1; 3 days; outgrowth in CAAc
+0.0
+0.4
-0.0
+0.1
+0.4
carbon source
Pimelic (C); anaerobic
+0.1
+0.2
+0.1
+0.2
+0.4
carbon source
Butyric Acid (C); anaerobic
+0.2
+0.2
+0.0
+0.2
+0.4
survival
starvation expt 2; 7 days; outgrowth in CAAc
-0.0
+0.1
+0.1
+0.3
+0.5
carbon source
4-Aminobutyric (C); anaerobic
+0.1
+0.3
+0.1
+0.2
+0.3
carbon source
L-Malic (C); anaerobic
+0.1
+0.2
+0.1
+0.5
+0.2
carbon source
Pimelic (C); anaerobic
+0.0
+0.3
+0.0
+0.5
+0.4
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