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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_017255 and TX73_017260 overlap by 4 nucleotides
TX73_017260 and TX73_017265 are separated by 22 nucleotides
TX73_017265 and TX73_017270 are separated by 553 nucleotides
TX73_017270 and TX73_017275 are separated by 90 nucleotides
TX73_017255: TX73_017255 - condensation domain-containing protein, at 3,764,460 to 3,766,769
_017255
TX73_017260: TX73_017260 - hybrid non-ribosomal peptide synthetase/type I polyketide synthase, at 3,766,766 to 3,774,814
_017260
TX73_017265: TX73_017265 - non-ribosomal peptide synthetase, at 3,774,837 to 3,776,750
_017265
TX73_017270: TX73_017270 - acyltransferase, at 3,777,304 to 3,778,377
_017270
TX73_017275: TX73_017275 - endo-1,4-beta-xylanase, at 3,778,468 to 3,780,285
_017275
Group
Condition
TX73
_017255
TX73
_017260
TX73
_017265
TX73
_017270
TX73
_017275
carbon source dark aerobic
PM with succinate aerobic in dark
-0.0
-0.0
-0.2
-0.4
-0.1
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.1
-0.1
-0.0
-0.3
-0.2
carbon source dark aerobic
PM with succinate aerobic in dark
-0.2
-0.0
-0.0
-0.4
-0.0
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.5
-0.0
-0.2
+0.4
-0.3
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.4
-0.1
-0.1
+0.4
-0.3
carbon source dark aerobic
PM with succinate aerobic in dark
+0.1
-0.1
-0.0
-0.3
-0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.3
-0.2
+0.1
+0.1
-0.1
sulfur source
NFM with pyruvate
-0.8
-0.1
+0.1
+0.5
-0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.6
-0.1
-0.5
+1.0
-0.2
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
+0.2
-0.1
-0.2
-0.2
-0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.3
+0.1
-0.2
+0.4
-0.2
carbon source
Butyric Acid (C); anaerobic
-0.2
+0.0
-0.3
+0.1
+0.1
carbon source
4-Aminobutyric (C); anaerobic
-0.3
+0.0
-0.1
+0.1
+0.1
survival outgrowth control
starvation outgrowth control in CAAc
-0.2
+0.0
-0.1
+0.1
+0.1
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
-0.1
-0.1
-0.1
+0.1
+0.2
carbon source
Pimelic (C); anaerobic
-0.2
+0.0
-0.1
+0.2
+0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.5
+0.3
-0.2
+0.8
-0.2
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
+0.1
+0.1
-0.2
-0.1
+0.2
carbon source
Azelaic (C); anaerobic
-0.1
+0.0
-0.2
+0.3
+0.1
sulfur source
NFM_No_Mo_Plus_VCl3 with acetate trihydrate
-0.1
+0.0
+0.2
+0.2
+0.1
sulfur source control
sulfur source control
+0.3
+0.1
-0.1
+0.1
+0.0
carbon source
Pimelic (C); anaerobic
+0.0
+0.1
-0.2
+0.4
+0.1
stress
PM_argon75_N2O25 with buyrate and 0.1 mM Chloride; in dark
+0.0
+0.1
-0.1
+0.3
+0.1
carbon source
Pimelic (C); anaerobic
+0.1
+0.1
-0.0
+0.2
+0.2
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.1
+0.2
+0.1
+0.2
-0.1
sulfur source
NFM with pyruvate
-0.1
+0.1
+0.1
+0.4
-0.0
carbon source
Butyric Acid (C); anaerobic
+0.2
-0.0
-0.0
+0.2
+0.3
carbon source
L-Leucine (C); anaerobic
+0.1
+0.1
+0.1
+0.2
+0.2
sulfur source
sodium isethionate sulfur source
+0.2
+0.1
+0.1
+0.1
+0.1
sulfur source
NFM_No_Mo_Plus_VCl3 with acetate trihydrate
+0.0
+0.1
+0.1
+0.4
+0.1
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