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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_016935 and TX73_016940 overlap by 4 nucleotides
TX73_016940 and TX73_016945 are separated by 14 nucleotides
TX73_016945 and TX73_016950 overlap by 4 nucleotides
TX73_016950 and TX73_016955 are separated by 104 nucleotides
TX73_016935: TX73_016935 - energy transducer TonB, at 3,692,922 to 3,693,770
_016935
TX73_016940: TX73_016940 - biopolymer transporter ExbD, at 3,693,767 to 3,694,216
_016940
TX73_016945: TX73_016945 - tonB-system energizer ExbB, at 3,694,231 to 3,695,166
_016945
TX73_016950: TX73_016950 - biliverdin-producing heme oxygenase, at 3,695,163 to 3,695,846
_016950
TX73_016955: TX73_016955 - TonB-dependent receptor, at 3,695,951 to 3,699,457
_016955
Group
Condition
TX73
_016935
TX73
_016940
TX73
_016945
TX73
_016950
TX73
_016955
carbon source
4-Hydroxybenzoate (C)
-0.1
-1.3
-0.2
+0.4
+0.0
sulfur source
sodium isethionate sulfur source
-0.3
-0.5
-0.2
-0.1
+0.0
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.0
-1.1
+0.0
+0.1
-0.1
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
-0.0
-0.9
-0.1
+0.1
-0.0
coculture
dpurH coculture with Glucose and NaCl and NH4Cl
-0.0
-0.9
-0.0
+0.1
-0.0
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.2
-0.6
-0.2
+0.3
+0.0
sulfur source control
sulfur source control
-0.1
-0.8
+0.1
+0.3
+0.1
sulfur source
NFM with pyruvate
+0.2
-0.8
-0.1
+0.1
+0.1
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-0.0
-0.7
-0.1
+0.4
+0.0
carbon source
Azelaic (C); anaerobic
+0.1
-0.7
+0.0
+0.0
+0.1
sulfur source
ethyl methyl sulfide sulfur source
-0.1
-0.4
-0.1
+0.2
+0.1
carbon source
MDC_bicarb with butyrate and Adenine
-0.1
-0.6
+0.2
+0.1
+0.1
carbon source
Pimelic (C); anaerobic
+0.0
-0.6
-0.0
+0.3
+0.0
sulfur source
NFM_No_Mo with acetate trihydrate
+0.2
-0.8
+0.1
+0.3
+0.0
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
-0.1
-0.6
-0.0
+0.5
+0.0
carbon source dark aerobic
PM with succinate aerobic in dark
-0.2
+0.5
+0.1
-0.2
-0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.2
+0.1
-0.2
+0.5
-0.1
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
-0.0
-0.3
-0.1
+0.6
-0.0
sulfur source
Dimethylsulfoniopropionate sulfur source
-0.1
+0.3
-0.1
+0.2
-0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.0
-0.4
-0.1
+0.7
+0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.0
+0.5
-0.4
+0.4
-0.2
sulfur source
Sulfoacetic sulfur source
+0.0
+0.6
+0.1
-0.2
-0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.1
+0.4
-0.2
+0.1
+0.1
sulfur source control
Dimethyl sulfide sulfur source
-0.2
+0.6
-0.0
+0.1
+0.1
carbon source
MDC_bicarb with butyrate and Adenine
+0.1
+0.6
-0.0
+0.1
+0.0
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.1
+0.5
-0.1
+0.2
+0.1
carbon source
Citraconic (C); anaerobic
-0.1
+0.5
+0.2
+0.3
+0.1
survival
starvation expt 4; 3 days; outgrowth in CAAc
+0.1
+0.3
+0.4
+0.2
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.1
+0.3
-0.1
+1.0
+0.1
survival outgrowth control
starvation outgrowth control in CAAc
+0.1
+0.7
+0.2
+0.1
+0.1
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