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Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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500 nt
TX73_014140 and TX73_014145 are separated by 202 nucleotides
TX73_014145 and TX73_014150 are separated by 228 nucleotides
TX73_014150 and TX73_014155 are separated by 161 nucleotides
TX73_014155 and TX73_014160 are separated by 324 nucleotides
TX73_014140: TX73_014140 - transcription antitermination factor NusB, at 3,098,241 to 3,098,765
_014140
TX73_014145: TX73_014145 - thiamine-phosphate kinase, at 3,098,968 to 3,099,939
_014145
TX73_014150: TX73_014150 - sodium-translocating pyrophosphatase, at 3,100,168 to 3,102,288
_014150
TX73_014155: TX73_014155 - DUF2171 domain-containing protein, at 3,102,450 to 3,102,692
_014155
TX73_014160: TX73_014160 - hypothetical protein, at 3,103,017 to 3,103,175
_014160
Group
Condition
TX73
_014140
TX73
_014145
TX73
_014150
TX73
_014155
TX73
_014160
survival
starvation expt 4; 7 days; outgrowth in CAAc
-1.5
N.D.
-0.8
+0.1
-0.6
survival
starvation expt 3; 7 days; outgrowth in CAAc
-1.9
N.D.
-0.6
+0.1
-0.4
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-2.4
N.D.
+0.0
+0.4
-0.5
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.6
N.D.
-0.7
+0.2
-1.1
survival
starvation expt 2; 3 days; outgrowth in CAAc
-2.0
N.D.
-0.6
+0.1
+0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
-1.8
N.D.
+0.2
+0.2
-0.7
survival
starvation expt 3; 14 days; outgrowth in CAAc
-1.3
N.D.
+0.0
-0.0
-0.7
survival
starvation expt 1; 3 days; outgrowth in CAAc
-1.2
N.D.
-0.4
-0.1
-0.2
survival
starvation expt 2; 7 days; outgrowth in CAAc
-1.2
N.D.
-0.8
+0.2
-0.1
survival
starvation expt 2; 14 days; outgrowth in CAAc
-1.3
N.D.
-0.3
-0.0
-0.4
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.8
N.D.
+0.3
-0.4
-0.9
survival
starvation expt 3; 3 days; outgrowth in CAAc
-1.3
N.D.
-0.4
+0.1
+0.2
survival
starvation expt 1; 7 days; outgrowth in CAAc
-1.1
N.D.
-0.5
+0.2
+0.1
carbon source
Sebacic (C); anaerobic
-1.7
N.D.
+0.3
+0.0
+0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.7
N.D.
+0.1
+0.3
-1.0
carbon source
Pimelic (C); anaerobic
-1.1
N.D.
+0.1
+0.3
-0.4
coculture
dpurH coculture with Glucose and NaCl and NH4Cl
+0.4
N.D.
-1.2
+0.2
-0.2
sulfur source
sodium isethionate sulfur source
+0.6
N.D.
-0.1
-0.7
-0.7
sulfur source control
Dimethyl sulfide sulfur source
-1.2
N.D.
+0.5
+0.3
-0.3
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.9
N.D.
+0.7
+0.2
-0.7
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.6
N.D.
+0.8
-0.1
-0.5
carbon source
4-Aminobutyric (C); anaerobic
-1.1
N.D.
+1.6
+0.1
+0.1
carbon source
4-Aminobutyric (C); anaerobic
-0.5
N.D.
+1.5
-0.0
+0.0
stress
PM_N2O butyrate and nitrate 0.1 mM
-0.3
N.D.
+1.8
-0.1
-0.2
carbon source
4-Aminobutyric (C); anaerobic
-0.4
N.D.
+1.7
+0.1
-0.1
stress
PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
+0.1
N.D.
+1.1
+0.4
-0.3
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.7
N.D.
+0.8
+0.2
-0.3
carbon source
4-Aminobutyric (C); anaerobic
-0.3
N.D.
+1.6
-0.2
+0.3
sulfur source
Dimethylsulfoniopropionate sulfur source
+0.7
N.D.
+0.8
-0.3
+0.6
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.1
N.D.
+1.8
+0.2
-0.0
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