Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_013935 and TX73_013940 are separated by 113 nucleotidesTX73_013940 and TX73_013945 are separated by 5 nucleotidesTX73_013945 and TX73_013950 are separated by 346 nucleotidesTX73_013950 and TX73_013955 are separated by 265 nucleotides TX73_013935: TX73_013935 - peroxiredoxin, at 3,060,866 to 3,061,444 _013935 TX73_013940: TX73_013940 - uracil-DNA glycosylase, at 3,061,558 to 3,062,232 _013940 TX73_013945: TX73_013945 - NYN domain-containing protein, at 3,062,238 to 3,062,888 _013945 TX73_013950: TX73_013950 - DNA-directed RNA polymerase subunit omega, at 3,063,235 to 3,063,627 _013950 TX73_013955: TX73_013955 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 3,063,893 to 3,066,175 _013955
Group Condition TX73_013935 TX73_013940 TX73_013945 TX73_013950 TX73_013955
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -0.1 -0.1 -2.1 N.D. -3.9
survival starvation expt 1; 14 days; outgrowth in CAAc -0.0 -0.0 -1.8 N.D. -4.0
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark +0.1 -0.2 -2.3 N.D. -3.5
survival starvation expt 3; 14 days; outgrowth in CAAc +0.0 +0.0 -1.4 N.D. -4.3
survival starvation expt 2; 14 days; outgrowth in CAAc -0.1 -0.0 -1.0 N.D. -4.4
survival starvation expt 4; 14 days; outgrowth in CAAc -0.1 -0.0 -0.9 N.D. -4.5
survival starvation expt 1; 7 days; outgrowth in CAAc -0.1 -0.0 -0.7 N.D. -4.4
carbon source PM with Formate and Sodium bicarbonate anaerobic with light -0.1 -0.1 -0.2 N.D. -4.8
survival starvation expt 3; 7 days; outgrowth in CAAc +0.0 +0.0 -0.8 N.D. -4.3
survival starvation expt 4; 3 days; outgrowth in CAAc +0.1 -0.3 -1.1 N.D. -3.7
carbon source 4-Hydroxybenzoate (C) -0.1 -0.6 -1.2 N.D. -3.1
survival starvation expt 1; 3 days; outgrowth in CAAc -0.0 -0.1 -1.2 N.D. -3.5
carbon source PM with Formate and Sodium bicarbonate anaerobic with light -0.1 -0.1 -0.1 N.D. -4.2
survival starvation expt 3; 3 days; outgrowth in CAAc -0.0 -0.0 -1.0 N.D. -3.4
survival starvation expt 2; 7 days; outgrowth in CAAc -0.0 -0.1 -0.6 N.D. -3.8
sulfur source Taurine sulfur source -0.1 +0.0 -0.3 N.D. -4.0
sulfur source Taurine sulfur source -0.1 -0.1 -0.5 N.D. -3.7
stress PM_N2O butyrate and nitrate 0.1 mM -0.0 +0.1 -0.4 N.D. -4.0
carbon source acetate trihydrate and Sodium L-Lactate (C) -0.3 +0.1 -1.3 N.D. -2.7
carbon source L-Leucine (C); anaerobic -0.1 -0.0 -0.3 N.D. -3.7
carbon source dark aerobic PM with succinate aerobic in dark -0.1 -0.1 -2.7 N.D. -1.2
survival starvation expt 4; 7 days; outgrowth in CAAc -0.1 +0.1 -0.5 N.D. -3.6
stress Benzoate (C), sodium fluoride stress -0.1 -0.1 -0.5 N.D. -3.3
survival starvation expt 2; 3 days; outgrowth in CAAc +0.1 -0.0 -0.8 N.D. -3.3
stress L-Lactate (C) with 10 mM Sodium Chloride -0.1 +0.2 -1.0 N.D. -3.0
sulfur source control Dimethyl sulfide sulfur source +0.0 -0.1 +0.4 N.D. -4.1
sulfur source control Dimethyl sulfide sulfur source +0.0 -0.1 +0.2 N.D. -3.9
sulfur source control Dimethyl sulfide sulfur source -0.2 +0.1 +0.3 N.D. -3.8
sulfur source Dimethylsulfoniopropionate sulfur source -0.3 -0.3 +0.2 N.D. -3.2
stress L-Lactate (C) with 10 mM Sodium Chloride -0.1 +0.6 -0.6 N.D. -3.1
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