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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_013105 and TX73_013110 overlap by 4 nucleotides
TX73_013110 and TX73_013115 are separated by 199 nucleotides
TX73_013115 and TX73_013120 are separated by 13 nucleotides
TX73_013120 and TX73_013125 are separated by 120 nucleotides
TX73_013105: TX73_013105 - hypothetical protein, at 2,876,614 to 2,876,745
_013105
TX73_013110: TX73_013110 - ETC complex I subunit, at 2,876,742 to 2,877,047
_013110
TX73_013115: TX73_013115 - carboxyl transferase domain-containing protein, at 2,877,247 to 2,878,851
_013115
TX73_013120: TX73_013120 - acetyl-CoA carboxylase biotin carboxylase subunit, at 2,878,865 to 2,880,880
_013120
TX73_013125: TX73_013125 - hydroxymethylglutaryl-CoA lyase, at 2,881,001 to 2,881,906
_013125
Group
Condition
TX73
_013105
TX73
_013110
TX73
_013115
TX73
_013120
TX73
_013125
carbon source
L-Leucine (C); anaerobic
+0.2
+0.3
-4.2
-3.7
-0.6
survival
starvation expt 2; 14 days; outgrowth in CAAc
-0.3
-3.8
-0.5
-0.2
-0.6
survival
starvation expt 3; 14 days; outgrowth in CAAc
-0.3
-3.2
-0.6
-0.3
-0.6
survival
starvation expt 1; 14 days; outgrowth in CAAc
+0.1
-2.8
-0.6
-0.5
-0.7
survival
starvation expt 4; 14 days; outgrowth in CAAc
-0.1
-2.9
-0.5
-0.2
-0.4
survival
starvation expt 4; 7 days; outgrowth in CAAc
-0.2
-1.4
-0.2
-0.3
-0.6
survival
starvation expt 3; 7 days; outgrowth in CAAc
-0.4
-1.0
-0.4
-0.3
-0.3
survival
starvation expt 2; 7 days; outgrowth in CAAc
-0.1
-1.3
-0.3
-0.2
-0.3
survival
starvation expt 1; 7 days; outgrowth in CAAc
-0.3
-0.6
-0.4
-0.4
-0.5
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-0.3
-1.1
-0.4
-0.2
+0.0
survival
starvation expt 1; 3 days; outgrowth in CAAc
-0.4
-0.1
-0.1
-0.4
-0.6
stress
L-Lactate (C) with 10 mM Sodium Chloride
-1.2
-0.6
-0.2
+0.1
+0.4
survival
starvation expt 3; 3 days; outgrowth in CAAc
-0.2
-0.2
-0.3
-0.3
-0.5
carbon source
MDC_bicarb with butyrate
-0.2
-0.7
-0.0
-0.2
-0.2
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-0.4
-0.6
-0.2
-0.3
+0.3
sulfur source
NFM with pyruvate
+0.2
-1.1
-0.1
+0.1
-0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.3
-0.7
-0.1
+0.0
+0.4
stress
PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
-0.3
-0.8
+0.0
+0.4
+0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.0
-0.4
-0.5
+0.3
+0.6
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.5
-0.4
+0.1
+0.7
+0.5
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.3
-0.3
+0.4
+0.4
+0.2
sulfur source
NFM with pyruvate
+0.2
-0.8
+0.0
+0.4
+0.6
stress
PM_N2O butyrate and nitrate 0.1 mM
-0.2
+0.2
+0.3
+0.4
+0.2
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
-0.1
-0.2
+0.5
+0.4
+0.5
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-1.0
+0.0
+0.3
+1.0
+0.7
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.4
-0.1
+0.3
+0.1
+0.5
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.0
+0.1
+0.4
+0.6
+0.4
carbon source
4-Hydroxybenzoate (C)
-0.3
+0.1
+0.8
+0.9
+0.2
carbon source
4-Hydroxybenzoate (C)
-0.0
-0.0
+0.9
+0.9
+0.3
carbon source
4-Hydroxybenzoate (C)
+0.4
+0.3
+1.0
+0.8
+0.1
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