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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_012470 and TX73_012475 overlap by 1 nucleotides
TX73_012475 and TX73_012480 overlap by 8 nucleotides
TX73_012480 and TX73_012485 are separated by 25 nucleotides
TX73_012485 and TX73_012490 are separated by 14 nucleotides
TX73_012470: TX73_012470 - branched-chain amino acid ABC transporter permease, at 2,737,022 to 2,738,086
_012470
TX73_012475: TX73_012475 - ABC transporter ATP-binding protein, at 2,738,086 to 2,738,808
_012475
TX73_012480: TX73_012480 - ABC transporter ATP-binding protein, at 2,738,801 to 2,739,514
_012480
TX73_012485: TX73_012485 - acetamidase/formamidase family protein, at 2,739,540 to 2,740,529
_012485
TX73_012490: TX73_012490 - amidohydrolase, at 2,740,544 to 2,742,283
_012490
Group
Condition
TX73
_012470
TX73
_012475
TX73
_012480
TX73
_012485
TX73
_012490
carbon source
4-Hydroxybenzoate (C)
-0.1
-0.2
-0.9
+0.1
-0.3
stress
PM_N2O butyrate and nitrate 0.1 mM
-0.0
-0.1
-1.2
-0.1
+0.2
stress
PM_argon75_N2O25 with buyrate and 0.1 mM Chloride; in dark
-0.0
+0.3
-1.2
-0.0
-0.1
sulfur source
NFM with pyruvate
-0.2
+0.2
-0.9
-0.2
+0.3
carbon source dark aerobic
PM with succinate aerobic in dark
-0.1
+0.4
-0.9
-0.0
-0.0
sulfur source control
sulfur source control
+0.4
-0.3
-0.2
-0.2
-0.1
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
-0.1
-0.1
-0.8
+0.2
+0.3
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.3
-0.3
+0.2
-0.2
+0.2
carbon source
Fumarate (C); anaerobic
+0.4
+0.1
-0.9
+0.1
+0.1
carbon source
MDC_bicarb with butyrate and Adenine
+0.1
-0.2
+0.6
-0.2
-0.3
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.1
+0.5
+0.2
-0.6
+0.1
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.0
+0.6
-0.5
+0.0
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.3
+0.7
+0.4
-0.2
-0.1
sulfur source
Thiamine HCl sulfur source
+0.5
-0.3
+0.3
+0.0
+0.0
sulfur source
NFM with pyruvate
+0.1
+0.4
+0.3
-0.3
+0.1
survival
starvation expt 4; 14 days; outgrowth in CAAc
+0.3
+0.3
-0.2
+0.1
+0.1
survival
starvation expt 1; 14 days; outgrowth in CAAc
+0.4
+0.2
+0.4
-0.3
+0.1
carbon source
4-Aminobutyric (C); anaerobic
+0.3
+0.2
+0.4
+0.2
-0.1
carbon source
Azelaic (C); anaerobic
+0.3
+0.1
+0.6
-0.2
+0.2
carbon source
Butyric Acid (C); anaerobic
+0.2
+0.4
+0.6
-0.3
+0.1
carbon source
MDC_bicarb with butyrate and Adenine
+0.5
-0.0
+0.2
+0.2
+0.2
carbon source
Pimelic (C); anaerobic
+0.1
-0.0
+0.8
+0.1
+0.2
carbon source
L-Leucine (C); anaerobic
+0.1
+0.2
+0.8
-0.1
+0.0
carbon source dark aerobic
PM with butyrate aerobic in dark
+0.0
+0.1
+0.8
+0.1
+0.2
survival
starvation expt 4; 3 days; outgrowth in CAAc
+0.4
+0.1
+0.3
+0.1
+0.2
sulfur source
Sulfoacetic sulfur source
+0.1
+0.1
+0.8
+0.3
-0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.3
+0.3
+0.9
+0.2
-0.3
survival outgrowth control
starvation outgrowth control in CAAc
+0.5
+0.2
+0.5
-0.1
+0.2
carbon source
Azelaic (C); anaerobic
+0.4
+0.2
+0.9
-0.2
-0.0
carbon source
Sebacic (C); anaerobic
+0.4
+0.2
+0.8
+0.1
+0.1
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