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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_011570 and TX73_011575 overlap by 4 nucleotides
TX73_011575 and TX73_011580 are separated by 156 nucleotides
TX73_011580 and TX73_011585 are separated by 345 nucleotides
TX73_011585 and TX73_011590 are separated by 193 nucleotides
TX73_011570: TX73_011570 - replication initiator protein A, at 2,538,643 to 2,539,545
_011570
TX73_011575: TX73_011575 - helix-turn-helix domain-containing protein, at 2,539,542 to 2,539,820
_011575
TX73_011580: TX73_011580 - DUF2285 domain-containing protein, at 2,539,977 to 2,540,540
_011580
TX73_011585: TX73_011585 - DUF2285 domain-containing protein, at 2,540,886 to 2,541,146
_011585
TX73_011590: TX73_011590 - helix-turn-helix transcriptional regulator, at 2,541,340 to 2,541,585
_011590
Group
Condition
TX73
_011570
TX73
_011575
TX73
_011580
TX73
_011585
TX73
_011590
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.2
-0.8
-0.3
-0.1
-0.6
carbon source
MDC_bicarb with butyrate
-0.3
-0.3
-0.3
-0.2
-0.8
carbon source dark aerobic
PM with succinate aerobic in dark
-0.4
-0.3
-0.5
-0.2
-0.4
carbon source dark aerobic
PM with succinate aerobic in dark
-0.4
-0.6
-0.1
-0.2
-0.5
carbon source
PM with succinate anaerobic with light
-0.3
-0.4
-0.4
-0.3
-0.3
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.4
-0.2
-0.4
-0.3
-0.4
carbon source dark aerobic
PM with succinate aerobic in dark
-0.4
-0.4
-0.3
-0.3
-0.4
carbon source
MDC_bicarb with butyrate
-0.3
-0.4
-0.3
-0.4
-0.2
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.4
-0.3
-0.6
-0.2
-0.2
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.4
-0.4
-0.3
-0.3
-0.2
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.4
-0.6
-0.3
-0.2
-0.1
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-0.3
-0.3
-0.4
-0.2
-0.3
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.3
-0.4
-0.3
-0.3
-0.2
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.3
-0.3
-0.4
-0.2
-0.2
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-0.4
-0.3
-0.4
-0.0
-0.4
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.3
-0.3
-0.3
-0.3
-0.2
carbon source
PM with succinate and Sodium Formate anaerobic with light
-0.2
-0.3
-0.4
-0.1
-0.5
sulfur source control
sulfur source control
-0.3
-0.3
-0.4
-0.1
-0.2
carbon source
MDC_bicarb with butyrate and Adenine
-0.2
-0.3
-0.3
-0.3
-0.3
carbon source dark aerobic
PM with succinate aerobic in dark
-0.3
-0.4
-0.2
-0.1
-0.3
carbon source dark aerobic
PM with succinate aerobic in dark
-0.3
-0.2
-0.3
-0.1
-0.4
carbon source
PM with succinate anaerobic with light
-0.3
-0.3
-0.2
-0.2
-0.4
sulfur source control
sulfur source control
-0.2
-0.5
-0.3
-0.1
-0.2
carbon source dark aerobic
PM with succinate aerobic in dark
-0.2
-0.4
-0.2
+0.0
-0.4
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.2
+0.1
+0.1
+0.2
-0.9
sulfur source
sodium isethionate sulfur source
-0.2
-0.3
+0.1
+0.3
-0.5
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.1
+0.3
+0.3
+0.3
-0.6
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.2
+0.0
+0.6
+0.2
-0.3
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.2
-0.0
+0.5
+0.6
-0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.1
+0.5
+0.3
+0.6
+0.2
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