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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_011520 and TX73_011525 are separated by 2 nucleotides
TX73_011525 and TX73_011530 are separated by 136 nucleotides
TX73_011530 and TX73_011535 overlap by 4 nucleotides
TX73_011535 and TX73_011540 are separated by 110 nucleotides
TX73_011520: TX73_011520 - TrbC/VirB2 family protein, at 2,529,722 to 2,530,033
_011520
TX73_011525: TX73_011525 - P-type conjugative transfer ATPase TrbB, at 2,530,036 to 2,531,019
_011525
TX73_011530: TX73_011530 - CopG family transcriptional regulator, at 2,531,156 to 2,531,599
_011530
TX73_011535: TX73_011535 - conjugal transfer protein TraG, at 2,531,596 to 2,533,599
_011535
TX73_011540: TX73_011540 - DUF3363 domain-containing protein, at 2,533,710 to 2,535,464
_011540
Group
Condition
TX73
_011520
TX73
_011525
TX73
_011530
TX73
_011535
TX73
_011540
carbon source
MDC_bicarb with butyrate
-1.5
-0.5
-0.4
-0.3
-0.2
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.8
-0.4
-0.3
-0.2
-0.3
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-1.6
-0.2
+0.2
-0.2
-0.2
sulfur source
Thiamine HCl sulfur source
-0.9
-0.5
-0.3
-0.2
-0.2
carbon source
MDC_bicarb with butyrate
-0.8
-0.4
-0.4
-0.3
-0.2
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.6
-0.5
-0.2
-0.3
-0.3
carbon source
MDC_bicarb with butyrate and Adenine
-0.9
-0.3
-0.3
-0.2
-0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-1.5
-0.1
-0.1
-0.1
-0.0
carbon source dark aerobic
PM with succinate aerobic in dark
-0.7
-0.2
-0.2
-0.2
-0.2
sulfur source
Thiamine HCl sulfur source
-0.8
-0.3
-0.3
-0.1
-0.1
sulfur source control
sulfur source control
-0.7
-0.1
-0.3
-0.2
-0.3
carbon source
MDC_bicarb with butyrate
-0.5
-0.5
-0.2
-0.2
-0.2
carbon source
MDC_bicarb with butyrate
-0.4
-0.4
-0.2
-0.2
-0.3
carbon source dark aerobic
PM with succinate aerobic in dark
-0.3
-0.4
-0.3
-0.2
-0.3
sulfur source
sodium isethionate sulfur source
-0.3
-0.1
-0.7
-0.2
-0.0
sulfur source
Thiamine HCl sulfur source
-0.6
-0.4
-0.2
-0.1
-0.1
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-0.1
-0.3
-0.5
-0.3
-0.3
carbon source
MDC_bicarb with butyrate and Adenine
-0.7
-0.1
-0.1
-0.1
-0.3
carbon source dark aerobic
PM with succinate aerobic in dark
-0.6
-0.1
-0.1
-0.2
-0.3
carbon source
PM with succinate anaerobic with light
-0.2
-0.2
-0.4
-0.3
-0.3
carbon source
PM with argon and butyrate 10 mM and Sodium bicarbonate 10 mM
-0.6
-0.4
-0.2
+0.1
-0.2
carbon source
PM with succinate anaerobic with light
-0.2
-0.4
-0.3
-0.2
-0.2
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.2
-0.3
-0.2
-0.3
-0.2
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.1
-0.3
-0.4
-0.2
-0.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-1.3
-0.1
+0.2
+0.0
-0.0
carbon source dark aerobic
PM with succinate aerobic in dark
+0.1
-0.4
-0.2
-0.3
-0.4
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.1
-0.3
-0.4
-0.2
-0.2
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
+0.2
-0.3
-0.3
-0.2
-0.3
carbon source
4-Hydroxybenzoate (C)
+0.8
-0.2
-0.7
-0.1
-0.1
sulfur source
NFM with pyruvate
+0.9
+0.1
+0.5
-0.2
+0.0
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