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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_010085 and TX73_010090 are separated by 126 nucleotides
TX73_010090 and TX73_010095 are separated by 111 nucleotides
TX73_010095 and TX73_010100 are separated by 79 nucleotides
TX73_010100 and TX73_010105 overlap by 4 nucleotides
TX73_010085: TX73_010085 - ATP-binding protein, at 2,200,080 to 2,201,603
_010085
TX73_010090: TX73_010090 - LLM class flavin-dependent oxidoreductase, at 2,201,730 to 2,202,746
_010090
TX73_010095: TX73_010095 - TetR/AcrR family transcriptional regulator, at 2,202,858 to 2,203,481
_010095
TX73_010100: TX73_010100 - efflux RND transporter periplasmic adaptor subunit, at 2,203,561 to 2,204,649
_010100
TX73_010105: TX73_010105 - efflux RND transporter periplasmic adaptor subunit, at 2,204,646 to 2,205,719
_010105
Group
Condition
TX73
_010085
TX73
_010090
TX73
_010095
TX73
_010100
TX73
_010105
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.1
-0.1
-1.9
-0.0
-0.1
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.0
-0.2
-1.0
-0.1
-0.1
survival
starvation expt 3; 14 days; outgrowth in CAAc
-0.1
+0.2
-0.4
-0.5
-0.5
survival
starvation expt 2; 14 days; outgrowth in CAAc
-0.1
-0.0
-0.3
-0.4
-0.5
survival
starvation expt 4; 14 days; outgrowth in CAAc
-0.1
+0.1
-0.4
-0.4
-0.5
survival
starvation expt 3; 3 days; outgrowth in CAAc
-0.3
+0.2
-0.7
-0.2
-0.1
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
+0.0
+0.1
-1.0
-0.1
-0.1
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.1
-0.0
-1.0
+0.0
+0.0
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.1
+0.0
-1.2
+0.1
+0.0
stress
PM_N2O butyrate and nitrate 0.1 mM
-0.1
-0.1
-1.0
+0.1
+0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.0
-0.1
-0.8
-0.1
+0.1
stress
PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
+0.1
-0.2
-0.8
-0.0
-0.0
survival
starvation expt 1; 7 days; outgrowth in CAAc
-0.1
+0.1
-0.6
-0.0
-0.3
stress
PM_argon75_N2O25 butyrate and nitrate 0.1 mM
+0.1
+0.1
-0.9
-0.0
-0.1
carbon source
4-Hydroxybenzoate (C)
+0.1
-0.1
-0.1
-0.4
-0.3
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.0
+0.1
-0.9
+0.0
-0.1
stress
PM_N2O butyrate and nitrate 0.1 mM
-0.1
-0.0
-0.8
-0.0
+0.2
survival
starvation expt 1; 3 days; outgrowth in CAAc
-0.1
+0.1
-0.6
-0.1
+0.1
stress
PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
+0.1
-0.0
-0.8
+0.1
+0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.3
-0.2
-0.7
+0.0
-0.1
stress
PM_argon75_N2O25 butyrate and nitrate 0.1 mM
+0.1
+0.1
-0.9
+0.1
+0.1
stress
PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
+0.2
-0.0
-0.7
-0.1
+0.1
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.2
-0.2
-0.6
+0.1
+0.0
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.1
-0.0
-0.7
+0.1
+0.1
carbon source
PM with succinate anaerobic with light
-0.1
+0.1
+0.3
-0.3
-0.4
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.3
-0.0
-0.6
-0.1
+0.1
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.0
+0.0
+0.5
-0.3
-0.3
sulfur source
NFM with pyruvate
-0.1
-0.1
+0.7
+0.0
+0.3
sulfur source control
sulfur source control
+0.1
+0.0
+0.6
+0.2
+0.2
sulfur source
NFM with pyruvate
+0.0
-0.0
+0.9
+0.1
+0.8
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