Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_010025 and TX73_010030 are separated by 116 nucleotidesTX73_010030 and TX73_010035 are separated by 353 nucleotidesTX73_010035 and TX73_010040 are separated by 118 nucleotidesTX73_010040 and TX73_010045 overlap by 4 nucleotides TX73_010025: TX73_010025 - formyl-CoA transferase, at 2,188,673 to 2,189,950 _010025 TX73_010030: TX73_010030 - GntR family transcriptional regulator, at 2,190,067 to 2,190,798 _010030 TX73_010035: TX73_010035 - pyrroloquinoline quinone precursor peptide PqqA, at 2,191,152 to 2,191,232 _010035 TX73_010040: TX73_010040 - pyrroloquinoline quinone biosynthesis protein PqqB, at 2,191,351 to 2,192,277 _010040 TX73_010045: TX73_010045 - pyrroloquinoline-quinone synthase PqqC, at 2,192,274 to 2,193,038 _010045
Group Condition TX73_010025 TX73_010030 TX73_010035 TX73_010040 TX73_010045
sulfur source NFM with pyruvate +0.0 +0.0 -2.3 +0.3 +0.1
survival starvation expt 4; 7 days; outgrowth in CAAc -0.0 -0.3 -0.2 -0.4 -0.1
stress PM_N2O butyrate and nitrate 0.1 mM -0.2 +0.0 -0.4 -0.1 -0.3
stress PM_N2O butyrate and nitrate 0.1 mM +0.0 -0.2 -0.6 -0.1 +0.1
carbon source MDC_bicarb with butyrate +0.1 +0.0 -0.4 -0.3 -0.2
sulfur source control sulfur source control +0.0 -0.3 +0.0 +0.1 -0.5
stress L-Lactate (C) with 10 mM Sodium Chloride -0.5 -0.4 -0.4 +0.1 +0.8
survival outgrowth control starvation outgrowth control in CAAc -0.0 -0.1 +0.3 -0.4 -0.1
sulfur source NFM_No_Mo with acetate trihydrate -0.1 -0.2 -0.5 +0.1 +0.3
sulfur source NFM_No_Mo with acetate trihydrate +0.2 +0.0 -0.6 +0.1 +0.1
sulfur source sodium isethionate sulfur source +0.1 -0.0 -0.5 +0.1 +0.2
carbon source PM with succinate anaerobic with light +0.2 -0.1 -0.2 +0.3 -0.3
carbon source 4-Hydroxybenzoate (C) +0.2 -0.0 +0.3 -0.2 -0.2
carbon source dark aerobic PM with succinate aerobic in dark +0.3 +0.0 -0.7 +0.2 +0.2
sulfur source NFM with succinate +0.3 +0.1 -0.4 +0.1 +0.0
carbon source MDC_bicarb with butyrate and Adenine +0.1 -0.0 +0.3 +0.3 -0.2
carbon source 4-Hydroxybenzoate (C) -0.2 +0.0 +0.4 -0.1 +0.2
carbon source acetate trihydrate and Sodium L-Lactate (C) -0.1 -0.2 +0.1 +0.1 +0.6
carbon source aspen wood chips that have been decomposed by a fungus (C) +0.1 +0.1 +0.5 -0.2 +0.2
carbon source PM with succinate and Sodium Formate anaerobic with light +0.1 +0.1 +0.5 +0.3 -0.1
carbon source PM with Formate and Sodium bicarbonate anaerobic with light +0.1 +0.3 +0.3 +0.2 +0.1
stress Benzoate (C), sodium fluoride stress +0.2 +0.1 +0.6 -0.2 +0.4
carbon source aspen wood chips that have been decomposed by a fungus (C) +0.2 +0.1 +0.7 +0.2 -0.1
carbon source dark aerobic PM with succinate aerobic in dark +0.2 +0.1 +0.4 +0.2 +0.1
stress L-Lactate (C) with 10 mM Sodium Chloride +0.0 -0.3 +0.5 +0.2 +0.7
sulfur source Dimethylsulfoniopropionate sulfur source +0.3 +0.1 +0.2 +0.2 +0.2
stress L-Lactate (C) with 10 mM Sodium Chloride -0.1 -0.3 +1.2 -0.2 +0.7
carbon source acetate trihydrate and Sodium L-Lactate (C) +0.1 +0.0 +0.3 +0.2 +0.9
carbon source 4-Hydroxybenzoate (C) +0.3 -0.0 +1.1 -0.2 +0.6
carbon source acetate trihydrate and Sodium L-Lactate (C) +0.2 +0.1 +1.0 +0.2 +0.9
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