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Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_010025 and TX73_010030 are separated by 116 nucleotides
TX73_010030 and TX73_010035 are separated by 353 nucleotides
TX73_010035 and TX73_010040 are separated by 118 nucleotides
TX73_010040 and TX73_010045 overlap by 4 nucleotides
TX73_010025: TX73_010025 - formyl-CoA transferase, at 2,188,673 to 2,189,950
_010025
TX73_010030: TX73_010030 - GntR family transcriptional regulator, at 2,190,067 to 2,190,798
_010030
TX73_010035: TX73_010035 - pyrroloquinoline quinone precursor peptide PqqA, at 2,191,152 to 2,191,232
_010035
TX73_010040: TX73_010040 - pyrroloquinoline quinone biosynthesis protein PqqB, at 2,191,351 to 2,192,277
_010040
TX73_010045: TX73_010045 - pyrroloquinoline-quinone synthase PqqC, at 2,192,274 to 2,193,038
_010045
Group
Condition
TX73
_010025
TX73
_010030
TX73
_010035
TX73
_010040
TX73
_010045
sulfur source
NFM with pyruvate
+0.0
+0.0
-2.3
+0.3
+0.1
survival
starvation expt 4; 7 days; outgrowth in CAAc
-0.0
-0.3
-0.2
-0.4
-0.1
stress
PM_N2O butyrate and nitrate 0.1 mM
-0.2
+0.0
-0.4
-0.1
-0.3
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.0
-0.2
-0.6
-0.1
+0.1
carbon source
MDC_bicarb with butyrate
+0.1
+0.0
-0.4
-0.3
-0.2
sulfur source control
sulfur source control
+0.0
-0.3
+0.0
+0.1
-0.5
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.5
-0.4
-0.4
+0.1
+0.8
survival outgrowth control
starvation outgrowth control in CAAc
-0.0
-0.1
+0.3
-0.4
-0.1
sulfur source
NFM_No_Mo with acetate trihydrate
-0.1
-0.2
-0.5
+0.1
+0.3
sulfur source
NFM_No_Mo with acetate trihydrate
+0.2
+0.0
-0.6
+0.1
+0.1
sulfur source
sodium isethionate sulfur source
+0.1
-0.0
-0.5
+0.1
+0.2
carbon source
PM with succinate anaerobic with light
+0.2
-0.1
-0.2
+0.3
-0.3
carbon source
4-Hydroxybenzoate (C)
+0.2
-0.0
+0.3
-0.2
-0.2
carbon source dark aerobic
PM with succinate aerobic in dark
+0.3
+0.0
-0.7
+0.2
+0.2
sulfur source
NFM with succinate
+0.3
+0.1
-0.4
+0.1
+0.0
carbon source
MDC_bicarb with butyrate and Adenine
+0.1
-0.0
+0.3
+0.3
-0.2
carbon source
4-Hydroxybenzoate (C)
-0.2
+0.0
+0.4
-0.1
+0.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.1
-0.2
+0.1
+0.1
+0.6
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.1
+0.1
+0.5
-0.2
+0.2
carbon source
PM with succinate and Sodium Formate anaerobic with light
+0.1
+0.1
+0.5
+0.3
-0.1
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.1
+0.3
+0.3
+0.2
+0.1
stress
Benzoate (C), sodium fluoride stress
+0.2
+0.1
+0.6
-0.2
+0.4
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.2
+0.1
+0.7
+0.2
-0.1
carbon source dark aerobic
PM with succinate aerobic in dark
+0.2
+0.1
+0.4
+0.2
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.0
-0.3
+0.5
+0.2
+0.7
sulfur source
Dimethylsulfoniopropionate sulfur source
+0.3
+0.1
+0.2
+0.2
+0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.1
-0.3
+1.2
-0.2
+0.7
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.1
+0.0
+0.3
+0.2
+0.9
carbon source
4-Hydroxybenzoate (C)
+0.3
-0.0
+1.1
-0.2
+0.6
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.2
+0.1
+1.0
+0.2
+0.9
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