Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_010000 and TX73_010005 are separated by 42 nucleotidesTX73_010005 and TX73_010010 are separated by 240 nucleotidesTX73_010010 and TX73_010015 are separated by 155 nucleotidesTX73_010015 and TX73_010020 are separated by 100 nucleotides TX73_010000: TX73_010000 - zinc-binding dehydrogenase, at 2,182,943 to 2,183,911 _010000 TX73_010005: TX73_010005 - nitronate monooxygenase family protein, at 2,183,954 to 2,184,949 _010005 TX73_010010: TX73_010010 - fumarylacetoacetate hydrolase family protein, at 2,185,190 to 2,185,975 _010010 TX73_010015: TX73_010015 - 2-dehydropantoate 2-reductase, at 2,186,131 to 2,187,111 _010015 TX73_010020: TX73_010020 - oxalate/formate MFS antiporter, at 2,187,212 to 2,188,504 _010020
Group Condition TX73_010000 TX73_010005 TX73_010010 TX73_010015 TX73_010020
stress L-Lactate (C) with 10 mM Sodium Chloride +0.0 +0.1 +0.2 -1.3 -0.2
sulfur source NFM_No_Mo_Plus_VCl3 with acetate trihydrate -0.0 -0.1 -0.4 -0.3 -0.2
carbon source 4-Hydroxybenzoate (C) +0.1 -0.1 -0.1 -0.1 -0.4
carbon source acetate trihydrate and Sodium L-Lactate (C) -0.0 +0.1 -0.1 -0.3 -0.4
carbon source Azelaic (C); anaerobic +0.0 -0.1 +0.1 -0.5 +0.0
survival outgrowth control starvation outgrowth control in CAAc -0.0 -0.0 +0.1 -0.4 -0.1
coculture dpurH coculture with Glucose and NaCl and NH4Cl -0.0 +0.1 -0.3 +0.2 -0.3
sulfur source NFM with pyruvate -0.1 -0.1 -0.1 -0.3 +0.3
sulfur source control sulfur source control +0.0 -0.1 +0.3 -0.1 -0.4
carbon source PM with succinate and Sodium Formate anaerobic with light +0.1 +0.1 +0.1 -0.4 -0.1
sulfur source sodium isethionate sulfur source +0.1 -0.0 +0.2 -0.3 -0.2
sulfur source control sulfur source control +0.0 +0.1 +0.2 -0.3 -0.2
survival starvation expt 1; 14 days; outgrowth in CAAc +0.1 -0.0 -0.1 -0.5 +0.2
carbon source Citraconic (C); anaerobic -0.1 +0.1 +0.2 -0.3 +0.0
carbon source dark aerobic PM with succinate aerobic in dark -0.1 +0.3 -0.1 -0.2 +0.1
sulfur source Thiamine HCl sulfur source +0.2 +0.2 +0.1 -0.3 -0.0
stress L-Lactate (C) with 10 mM Sodium Chloride +0.2 -0.0 +0.4 -0.2 -0.1
sulfur source NFM with pyruvate +0.0 +0.2 -0.2 +0.3 +0.1
sulfur source sodium isethionate sulfur source -0.0 +0.2 +0.1 +0.4 -0.3
sulfur source NFM_No_Mo with acetate trihydrate -0.1 +0.0 -0.2 +0.5 +0.2
carbon source PM with Formate and Sodium bicarbonate anaerobic with light +0.4 +0.1 +0.2 -0.3 +0.1
sulfur source control sulfur source control +0.2 +0.1 +0.5 -0.0 -0.2
carbon source PM with succinate anaerobic with light +0.1 +0.0 +0.1 +0.4 -0.1
carbon source aspen wood chips that have been decomposed by a fungus (C) +0.2 -0.0 -0.1 +0.3 +0.2
carbon source dark aerobic PM with succinate aerobic in dark -0.1 +0.0 +0.3 +0.4 +0.1
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -0.1 +0.3 +0.0 +0.3 +0.2
carbon source Citraconic (C); anaerobic -0.1 +0.1 +0.0 +0.4 +0.3
carbon source aspen wood chips that have been decomposed by a fungus (C) +0.1 +0.0 +0.2 +0.1 +0.4
carbon source PM with Formate and Sodium bicarbonate anaerobic with light +0.2 -0.0 +0.1 +0.2 +0.3
carbon source MDC_bicarb with butyrate and Adenine +0.2 +0.0 +0.3 +0.4 -0.1
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