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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_009140 and TX73_009145 are separated by 295 nucleotides
TX73_009145 and TX73_009150 overlap by 8 nucleotides
TX73_009150 and TX73_009155 are separated by 187 nucleotides
TX73_009155 and TX73_009160 are separated by 338 nucleotides
TX73_009140: TX73_009140 - Zn-ribbon domain-containing OB-fold protein, at 1,992,323 to 1,992,736
_009140
TX73_009145: TX73_009145 - amidase, at 1,993,032 to 1,994,381
_009145
TX73_009150: TX73_009150 - DUF2848 domain-containing protein, at 1,994,374 to 1,995,060
_009150
TX73_009155: TX73_009155 - PaaI family thioesterase, at 1,995,248 to 1,995,697
_009155
TX73_009160: TX73_009160 - 4-hydroxybenzoate 3-monooxygenase, at 1,996,036 to 1,997,208
_009160
Group
Condition
TX73
_009140
TX73
_009145
TX73
_009150
TX73
_009155
TX73
_009160
survival
starvation expt 3; 3 days; outgrowth in CAAc
-0.2
-0.2
-0.1
-0.3
-0.2
stress
PM_argon75_N2O25 with buyrate and 0.1 mM Chloride; in dark
-0.6
+0.2
-0.4
-0.0
-0.0
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.4
+0.3
-0.3
-0.5
+0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.1
-0.1
-0.7
+0.3
-0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.0
+0.2
-0.6
+0.2
-0.3
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.0
+0.2
-0.5
-0.2
-0.1
sulfur source control
sulfur source control
-0.3
-0.0
-0.3
+0.3
-0.1
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
-0.4
+0.2
+0.2
-0.1
-0.3
carbon source
Butyric Acid (C); anaerobic
+0.2
-0.2
+0.2
-0.2
-0.3
carbon source
MDC_bicarb with butyrate and Adenine
+0.4
-0.3
-0.3
-0.1
-0.1
sulfur source
NFM_No_Mo_Plus_VCl3 with acetate trihydrate
+0.3
-0.1
+0.1
-0.3
-0.2
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.3
+0.0
-0.0
+0.3
-0.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.2
+0.0
-0.6
+0.1
+0.1
carbon source
Fumarate (C); anaerobic
-0.1
-0.3
+0.3
+0.1
-0.2
sulfur source
NFM_No_Mo with acetate trihydrate
+0.1
-0.1
+0.2
-0.4
+0.2
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
-0.3
-0.2
+0.1
+0.0
+0.3
sulfur source control
sulfur source control
-0.2
-0.3
+0.3
-0.0
+0.2
carbon source dark aerobic
PM with succinate aerobic in dark
+0.1
+0.3
+0.2
-0.5
+0.0
carbon source
MDC_bicarb with butyrate
-0.1
+0.3
-0.1
+0.4
-0.3
survival
starvation expt 4; 3 days; outgrowth in CAAc
+0.2
-0.3
+0.3
+0.2
-0.1
sulfur source
sodium isethionate sulfur source
+0.3
-0.0
-0.2
+0.3
+0.1
carbon source
MDC_bicarb with butyrate and Adenine
-0.0
-0.0
+0.3
+0.4
-0.2
stress
PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark
-0.2
+0.2
+0.2
+0.3
-0.0
carbon source dark aerobic
PM with succinate aerobic in dark
-0.2
-0.1
+0.2
+0.3
+0.3
carbon source
PM with succinate anaerobic with light
+0.3
+0.1
-0.2
+0.4
+0.0
carbon source
MDC_bicarb with butyrate and Adenine
-0.3
+0.1
+0.1
+0.4
+0.3
sulfur source
NFM with pyruvate
+0.6
+0.5
+0.3
-0.7
+0.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.3
+0.1
+0.2
+0.4
+0.0
sulfur source
sodium isethionate sulfur source
+0.1
+0.3
+0.1
+0.3
+0.1
carbon source dark aerobic
PM with succinate aerobic in dark
+0.3
+0.1
-0.1
+0.4
+0.4
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