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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_008595 and TX73_008600 are separated by 378 nucleotides
TX73_008600 and TX73_008605 are separated by 177 nucleotides
TX73_008605 and TX73_008610 are separated by 646 nucleotides
TX73_008610 and TX73_008615 are separated by 178 nucleotides
TX73_008595: TX73_008595 - BON domain-containing protein, at 1,857,411 to 1,858,061
_008595
TX73_008600: TX73_008600 - phosphoketolase family protein, at 1,858,440 to 1,860,791
_008600
TX73_008605: TX73_008605 - response regulator, at 1,860,969 to 1,861,472
_008605
TX73_008610: TX73_008610 - methyl-accepting chemotaxis protein, at 1,862,119 to 1,864,269
_008610
TX73_008615: TX73_008615 - hybrid sensor histidine kinase/response regulator, at 1,864,448 to 1,867,261
_008615
Group
Condition
TX73
_008595
TX73
_008600
TX73
_008605
TX73
_008610
TX73
_008615
sulfur source
NFM with pyruvate
+0.3
+0.2
-1.6
-0.3
-1.4
survival
starvation expt 3; 3 days; outgrowth in CAAc
-0.3
-0.0
-0.0
-0.1
-0.5
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.2
-0.1
-0.2
-0.0
-0.2
sulfur source
NFM with pyruvate
-0.0
+0.1
-0.1
-0.4
-0.3
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.2
-0.0
-0.3
-0.2
-0.3
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.2
+0.0
-0.2
-0.3
-0.3
carbon source
Butyric Acid (C); anaerobic
-0.1
-0.0
-0.1
+0.1
-0.4
carbon source
4-Hydroxybenzoate (C)
+0.0
+0.1
-0.2
+0.0
-0.3
stress
Benzoate (C), sodium fluoride stress
-0.3
+0.1
-0.3
+0.2
+0.1
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.4
+0.1
-0.0
-0.2
-0.6
sulfur source control
sulfur source control
+0.1
+0.0
-0.3
-0.2
+0.1
sulfur source
Dimethylsulfoniopropionate sulfur source
+0.1
-0.1
-0.5
-0.0
+0.3
carbon source
MDC_bicarb with butyrate
+0.1
-0.2
+0.3
-0.1
-0.2
stress
PM_argon75_N2O25 butyrate and nitrate 0.1 mM
-0.1
-0.0
+0.2
+0.1
-0.3
sulfur source
NFM with succinate
+0.0
-0.3
-0.2
+0.1
+0.2
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.2
+0.0
-0.2
+0.2
-0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
+0.1
+0.1
+0.0
-0.5
+0.2
carbon source dark aerobic
PM with butyrate aerobic in dark
+0.1
-0.1
-0.5
+0.1
+0.4
stress
Benzoate (C), sodium fluoride stress
-0.1
+0.1
-0.3
+0.0
+0.3
stress
PM_N2O butyrate and nitrate 0.1 mM
+0.2
-0.1
+0.2
+0.0
-0.3
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-0.0
-0.1
-0.0
-0.2
+0.5
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
-0.0
-0.0
-0.3
+0.0
+0.4
carbon source
MDC_bicarb with butyrate and Adenine
+0.2
-0.3
-0.1
-0.0
+0.4
carbon source dark aerobic
PM with butyrate aerobic in dark
-0.1
-0.1
-0.1
-0.1
+0.5
carbon source
MDC_bicarb with butyrate and Adenine
+0.2
-0.0
+0.2
-0.2
+0.2
sulfur source
NFM with succinate
+0.2
-0.2
-0.1
-0.0
+0.5
sulfur source
sodium isethionate sulfur source
+0.2
+0.0
-0.3
+0.2
+0.2
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.2
+0.2
+0.2
+0.0
-0.3
carbon source dark aerobic
PM with succinate aerobic in dark
+0.1
-0.0
+0.1
-0.1
+0.5
carbon source
4-Hydroxybenzoate (C)
+0.3
+0.2
+0.3
+0.0
+0.1
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