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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_008535 and TX73_008540 are separated by 51 nucleotides
TX73_008540 and TX73_008545 are separated by 30 nucleotides
TX73_008545 and TX73_008550 are separated by 107 nucleotides
TX73_008550 and TX73_008555 are separated by 27 nucleotides
TX73_008535: TX73_008535 - heavy metal translocating P-type ATPase, at 1,844,416 to 1,847,337
_008535
TX73_008540: TX73_008540 - metal-sensitive transcriptional regulator, at 1,847,389 to 1,847,664
_008540
TX73_008545: TX73_008545 - hypothetical protein, at 1,847,695 to 1,848,375
_008545
TX73_008550: TX73_008550 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 1,848,483 to 1,849,334
_008550
TX73_008555: TX73_008555 - VOC family protein, at 1,849,362 to 1,849,904
_008555
Group
Condition
TX73
_008535
TX73
_008540
TX73
_008545
TX73
_008550
TX73
_008555
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-1.6
-1.6
+0.1
+0.0
-0.1
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-1.8
-0.7
-0.3
-0.0
-0.0
carbon source
aspen wood chips that have been decomposed by a fungus (C)
-2.0
-0.2
-0.1
-0.0
+0.0
sulfur source
Dimethylsulfoniopropionate sulfur source
-1.2
-0.6
-0.0
-0.1
-0.1
sulfur source control
Dimethyl sulfide sulfur source
-1.4
-0.5
-0.2
-0.0
+0.0
sulfur source
NFM with succinate
-1.0
-0.2
-0.2
-0.2
-0.3
sulfur source control
Dimethyl sulfide sulfur source
-1.2
-0.4
-0.1
-0.1
-0.1
sulfur source
Dimethylsulfoniopropionate sulfur source
-1.4
-0.2
-0.1
-0.1
+0.1
stress
Benzoate (C), sodium fluoride stress
-1.7
-0.2
+0.1
-0.0
+0.1
carbon source
Citraconic (C); anaerobic
-1.3
-0.3
-0.2
+0.1
-0.0
carbon source
Citraconic (C); anaerobic
-1.1
-0.4
-0.1
-0.0
+0.1
sulfur source control
Dimethyl sulfide sulfur source
-1.2
-0.5
+0.1
-0.0
+0.1
carbon source
L-Leucine (C); anaerobic
-1.3
-0.3
+0.1
-0.1
+0.2
carbon source
aspen wood chips that have been decomposed by a fungus (C)
-2.0
+0.1
-0.0
+0.1
+0.4
carbon source
Citraconic (C); anaerobic
-1.3
-0.2
-0.0
+0.1
+0.1
carbon source
aspen wood chips that have been decomposed by a fungus (C)
-1.4
+0.1
+0.2
-0.2
+0.1
sulfur source
NFM with succinate
-1.2
-0.2
-0.1
+0.2
+0.1
stress
Benzoate (C), sodium fluoride stress
-1.0
-0.4
+0.3
+0.1
-0.0
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.7
-0.8
-0.5
-0.1
-0.2
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.5
-0.4
-0.6
-0.1
-0.2
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.6
-1.0
-0.4
-0.0
+0.1
carbon source
4-Hydroxybenzoate (C)
-0.9
+0.7
-0.2
+0.1
+0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.5
+1.4
-0.0
-0.4
-0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.5
+1.6
-0.1
-0.4
-0.2
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.5
+1.7
-0.1
-0.2
-0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.1
+1.5
-0.1
+0.0
-0.2
sulfur source
NFM with pyruvate
-0.4
+1.7
-0.1
-0.0
+0.0
sulfur source
NFM with pyruvate
-0.3
+2.0
-0.3
+0.5
-0.5
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.2
+1.9
-0.2
+0.2
-0.3
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.0
+1.8
-0.2
-0.0
-0.2
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