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Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_008125 and TX73_008130 are separated by 204 nucleotides
TX73_008130 and TX73_008135 overlap by 4 nucleotides
TX73_008135 and TX73_008140 are separated by 243 nucleotides
TX73_008140 and TX73_008145 are separated by 59 nucleotides
TX73_008125: TX73_008125 - adenylate/guanylate cyclase domain-containing protein, at 1,759,985 to 1,761,754
_008125
TX73_008130: TX73_008130 - TIGR01620 family protein, at 1,761,959 to 1,763,068
_008130
TX73_008135: TX73_008135 - YcjX family protein, at 1,763,065 to 1,764,534
_008135
TX73_008140: TX73_008140 - hemolysin III family protein, at 1,764,778 to 1,765,473
_008140
TX73_008145: TX73_008145 - SDR family NAD(P)-dependent oxidoreductase, at 1,765,533 to 1,766,333
_008145
Group
Condition
TX73
_008125
TX73
_008130
TX73
_008135
TX73
_008140
TX73
_008145
carbon source
Citraconic (C); anaerobic
-0.1
-1.6
-0.6
-0.1
-0.0
survival outgrowth control
starvation outgrowth control in CAAc
-0.2
-1.4
-0.6
-0.1
+0.2
sulfur source
NFM_No_Mo_Plus_VCl3 with acetate trihydrate
-0.0
-1.2
-0.7
-0.0
-0.0
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.1
-0.1
-0.7
-0.5
-0.4
sulfur source
NFM_No_Mo_Plus_VCl3 with acetate trihydrate
-0.1
-0.8
-0.6
-0.1
-0.1
survival
starvation expt 2; 14 days; outgrowth in CAAc
-0.1
-0.5
-0.4
-0.5
-0.1
survival
starvation expt 4; 3 days; outgrowth in CAAc
-0.1
-0.5
-1.0
-0.0
-0.0
carbon source
L-Leucine (C); anaerobic
-0.1
-0.7
-0.7
-0.1
-0.0
survival outgrowth control
starvation outgrowth control in CAAc
-0.2
-0.8
-0.5
-0.1
-0.0
survival
starvation expt 1; 14 days; outgrowth in CAAc
+0.1
-0.7
-0.6
-0.4
+0.1
carbon source
4-Aminobutyric (C); anaerobic
-0.2
-1.1
-0.3
-0.1
+0.1
survival outgrowth control
starvation outgrowth control in CAAc
-0.1
-1.0
-0.4
-0.1
+0.0
survival
starvation expt 3; 7 days; outgrowth in CAAc
-0.2
-0.9
-0.4
-0.1
-0.0
monoculture
OAcsForEtOH (C); monoculture
-0.0
-1.0
-0.5
+0.0
+0.0
survival
starvation expt 3; 14 days; outgrowth in CAAc
-0.0
-0.5
-0.7
-0.3
+0.0
sulfur source
NFM_No_Mo with acetate trihydrate
-0.1
-0.4
-0.7
-0.2
-0.1
survival
starvation expt 3; 3 days; outgrowth in CAAc
-0.0
-0.7
-0.4
-0.1
-0.1
stress
PM_argon75_N2O25 with buyrate and 0.1 mM nitrate; in dark
-0.0
-0.6
-0.6
-0.1
-0.1
sulfur source control
sulfur source control
+0.0
-0.9
-0.4
-0.2
+0.1
sulfur source
NFM_No_Mo with acetate trihydrate
+0.1
-0.6
-0.7
-0.2
+0.0
survival
starvation expt 4; 14 days; outgrowth in CAAc
-0.0
-0.2
-0.7
-0.4
+0.1
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
+0.1
-0.7
-0.6
-0.0
+0.0
sulfur source
NFM with pyruvate
-0.2
-1.1
+0.1
+0.1
+0.0
sulfur source
NFM with pyruvate
+0.0
-1.1
+0.4
-0.1
-0.1
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.1
-0.8
+0.3
+0.1
-0.2
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
-0.0
+0.6
-0.6
-0.4
-0.0
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.1
+1.5
-0.4
+0.1
-0.0
carbon source dark aerobic
PM with succinate aerobic in dark
+0.0
+0.6
+0.6
-0.1
-0.0
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
-0.0
+0.6
+1.8
-0.2
-0.1
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
+0.0
+0.6
+1.8
-0.1
-0.1
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