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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_006535 and TX73_006540 are separated by 91 nucleotides
TX73_006540 and TX73_006545 are separated by 282 nucleotides
TX73_006545 and TX73_006550 are separated by 262 nucleotides
TX73_006550 and TX73_006555 are separated by 232 nucleotides
TX73_006535: TX73_006535 - AAA family ATPase, at 1,392,795 to 1,393,904
_006535
TX73_006540: TX73_006540 - class I SAM-dependent methyltransferase, at 1,393,996 to 1,394,691
_006540
TX73_006545: TX73_006545 - DNA starvation/stationary phase protection protein, at 1,394,974 to 1,395,501
_006545
TX73_006550: TX73_006550 - hypothetical protein, at 1,395,764 to 1,396,288
_006550
TX73_006555: TX73_006555 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 1,396,521 to 1,397,714
_006555
Group
Condition
TX73
_006535
TX73
_006540
TX73
_006545
TX73
_006550
TX73
_006555
sulfur source
NFM with pyruvate
-0.0
-0.2
-0.0
-0.5
N.D.
sulfur source
sodium isethionate sulfur source
+0.1
-0.1
+0.1
-0.7
N.D.
carbon source dark aerobic
PM with succinate aerobic in dark
+0.1
+0.2
-0.1
-0.7
N.D.
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
+0.0
+0.2
+0.2
-0.6
N.D.
carbon source dark aerobic
PM with butyrate aerobic in dark
+0.3
-0.1
+0.3
-0.7
N.D.
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.1
-0.6
+0.3
+0.3
N.D.
carbon source
MDC_bicarb with butyrate and Adenine
+0.3
+0.2
+0.1
-0.6
N.D.
carbon source
Fumarate (C); anaerobic
-0.0
+0.1
-0.3
+0.4
N.D.
carbon source
Butyric Acid (C); anaerobic
+0.1
+0.1
-0.4
+0.4
N.D.
stress
Benzoate (C), sodium fluoride stress
-0.1
+0.1
+0.4
-0.2
N.D.
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
-0.0
-0.3
+0.2
+0.3
N.D.
carbon source
PM with succinate anaerobic with light
+0.1
+0.4
-0.1
-0.1
N.D.
carbon source
MDC_bicarb with butyrate
+0.1
+0.2
-0.3
+0.2
N.D.
carbon source
Citraconic (C); anaerobic
-0.1
+0.3
-0.3
+0.3
N.D.
carbon source
Pimelic (C); anaerobic
-0.2
+0.1
+0.1
+0.3
N.D.
carbon source
PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM
+0.2
+0.3
+0.4
-0.5
N.D.
carbon source
4-Aminobutyric (C); anaerobic
+0.1
+0.2
-0.3
+0.3
N.D.
survival
starvation expt 4; 3 days; outgrowth in CAAc
-0.3
+0.1
+0.3
+0.3
N.D.
carbon source
acetate trihydrate and Sodium L-Lactate (C)
-0.5
-0.2
+0.5
+0.7
N.D.
sulfur source
Dimethylsulfoniopropionate sulfur source
-0.2
+0.1
+0.3
+0.3
N.D.
carbon source
L-Malic (C); anaerobic
-0.3
+0.1
+0.1
+0.6
N.D.
sulfur source
2-(Methylthio)ethanol sulfur source
-0.0
+0.4
-0.0
+0.3
N.D.
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.2
-0.2
+0.1
+0.7
N.D.
carbon source dark aerobic
PM with succinate aerobic in dark
+0.2
+0.4
+0.2
-0.0
N.D.
sulfur source
NFM with succinate
-0.1
+0.3
+0.3
+0.3
N.D.
carbon source
4-Aminobutyric (C); anaerobic
-0.0
+0.4
+0.3
+0.1
N.D.
coculture
dpurH coculture with Glucose and NaCl and NH4Cl
+0.0
+0.2
+0.2
+0.4
N.D.
carbon source
4-Aminobutyric (C); anaerobic
+0.1
+0.3
-0.2
+0.6
N.D.
carbon source
PM with succinate and Sodium Formate anaerobic with light
+0.3
+0.4
+0.1
+0.1
N.D.
sulfur source
NFM with pyruvate
-0.2
+0.4
+0.1
+0.9
N.D.
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