Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_006430 and TX73_006435 are separated by 10 nucleotidesTX73_006435 and TX73_006440 are separated by 10 nucleotidesTX73_006440 and TX73_006445 are separated by 36 nucleotidesTX73_006445 and TX73_006450 are separated by 188 nucleotides TX73_006430: TX73_006430 - urea ABC transporter permease subunit UrtC, at 1,372,556 to 1,373,707 _006430 TX73_006435: TX73_006435 - urea ABC transporter ATP-binding protein UrtD, at 1,373,718 to 1,374,473 _006435 TX73_006440: TX73_006440 - urea ABC transporter ATP-binding subunit UrtE, at 1,374,484 to 1,375,173 _006440 TX73_006445: TX73_006445 - acetamidase/formamidase family protein, at 1,375,210 to 1,376,439 _006445 TX73_006450: TX73_006450 - zinc ribbon domain-containing protein, at 1,376,628 to 1,376,972 _006450
Group Condition TX73_006430 TX73_006435 TX73_006440 TX73_006445 TX73_006450
carbon source MDC_bicarb with butyrate and Adenine -0.1 -0.2 -0.5 +0.2 -1.3
carbon source Azelaic (C); anaerobic +0.0 -0.2 -0.1 -0.2 -0.5
carbon source L-Malic (C); anaerobic +0.0 -0.0 -0.1 -0.2 -0.6
stress L-Lactate (C) with 10 mM Sodium Chloride +0.0 +0.4 -0.4 -0.6 -0.3
carbon source dark aerobic PM with butyrate aerobic in dark -0.1 +0.3 -0.2 -0.4 -0.3
sulfur source sodium isethionate sulfur source -0.1 -0.1 -0.6 -0.2 +0.4
survival starvation expt 3; 7 days; outgrowth in CAAc -0.0 +0.0 -0.4 +0.2 -0.4
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -0.0 -0.3 +0.1 -0.3 +0.2
carbon source acetate trihydrate and Sodium L-Lactate (C) -0.3 +0.3 -0.6 -0.2 +0.4
carbon source MDC_bicarb with butyrate -0.1 -0.0 -0.7 +0.1 +0.4
stress L-Lactate (C) with 10 mM Sodium Chloride -0.1 -0.2 +0.6 -0.4 -0.2
stress L-Lactate (C) with 10 mM Sodium Chloride +0.0 +0.2 -0.4 -0.3 +0.3
coculture dpurH coculture with Glucose and NaCl and NH4Cl +0.0 +0.2 +0.3 -0.1 -0.7
sulfur source NFM with pyruvate +0.5 +0.3 -0.8 -0.0 -0.2
carbon source acetate trihydrate and Sodium L-Lactate (C) +0.2 +0.2 +0.0 -0.4 -0.2
carbon source Butyric Acid (C); anaerobic +0.1 +0.3 -0.1 +0.3 -0.6
carbon source dark aerobic PM with butyrate aerobic in dark -0.1 +0.0 -0.5 +0.1 +0.4
stress PM_argon75_N2O25 butyrate and Chloride 0.1 mM +0.3 -0.0 +0.2 -0.1 -0.4
carbon source MDC_bicarb with butyrate and Adenine +0.2 +0.2 +0.0 +0.4 -0.7
sulfur source NFM with succinate -0.1 -0.3 +0.1 +0.1 +0.3
carbon source dark aerobic PM with succinate aerobic in dark +0.3 -0.1 -0.3 +0.1 +0.4
sulfur source control Dimethyl sulfide sulfur source +0.1 -0.2 +0.2 -0.2 +0.4
carbon source PM with succinate and Sodium Formate anaerobic with light +0.2 +0.0 -0.1 -0.3 +0.6
stress PM_argon75_N2O25 butyrate and nitrate 0.1 mM +0.1 +0.1 +0.3 -0.3 +0.3
sulfur source control sulfur source control -0.2 +0.1 +0.3 +0.2 +0.5
sulfur source ethyl methyl sulfide sulfur source +0.1 +0.2 +0.2 -0.1 +0.6
sulfur source ethyl methyl sulfide sulfur source +0.1 +0.2 +0.3 -0.0 +0.4
sulfur source Thiamine HCl sulfur source +0.4 +0.0 +0.2 -0.1 +0.4
sulfur source Thiamine HCl sulfur source +0.1 +0.3 +0.6 +0.2 -0.0
stress PM_argon75_N2O25 butyrate and Chloride 0.1 mM +0.1 -0.2 +0.4 +0.4 +0.6
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