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Protein
Homologs
Fitness for 5 genes in
Rhodopseudomonas palustris CGA009
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
TX73_006300 and TX73_006305 are separated by 14 nucleotides
TX73_006305 and TX73_006310 are separated by 23 nucleotides
TX73_006310 and TX73_006315 are separated by 209 nucleotides
TX73_006315 and TX73_006320 are separated by 2 nucleotides
TX73_006300: TX73_006300 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 1,344,510 to 1,345,340
_006300
TX73_006305: TX73_006305 - 2-oxoacid:acceptor oxidoreductase family protein, at 1,345,355 to 1,345,915
_006305
TX73_006310: TX73_006310 - phenylacetate--CoA ligase, at 1,345,939 to 1,347,273
_006310
TX73_006315: TX73_006315 - branched-chain amino acid ABC transporter permease, at 1,347,483 to 1,348,355
_006315
TX73_006320: TX73_006320 - branched-chain amino acid ABC transporter permease, at 1,348,358 to 1,349,503
_006320
Group
Condition
TX73
_006300
TX73
_006305
TX73
_006310
TX73
_006315
TX73
_006320
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.6
-0.2
-0.0
+0.0
-0.0
survival outgrowth control
starvation outgrowth control in CAAc
-0.2
-0.6
+0.1
-0.0
+0.0
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.1
-0.6
+0.2
-0.3
-0.0
survival
starvation expt 1; 7 days; outgrowth in CAAc
-0.2
-0.3
+0.3
-0.0
-0.2
sulfur source control
sulfur source control
+0.3
-0.1
-0.2
-0.4
+0.0
survival
starvation expt 1; 14 days; outgrowth in CAAc
-0.1
-0.3
+0.3
+0.0
-0.2
carbon source
Citraconic (C); anaerobic
-0.6
+0.1
+0.1
+0.1
+0.1
carbon source
Fumarate (C); anaerobic
-0.5
+0.3
-0.2
-0.1
+0.1
carbon source
PM with Formate and Sodium bicarbonate anaerobic with light
-0.4
-0.1
+0.0
+0.1
+0.2
sulfur source
Sulfoacetic sulfur source
-0.1
+0.3
+0.1
-0.3
-0.2
carbon source
Azelaic (C); anaerobic
-0.3
+0.1
-0.1
-0.2
+0.2
carbon source
acetate trihydrate and Sodium L-Lactate (C)
+0.3
-0.4
+0.1
-0.2
+0.1
carbon source
aspen wood chips that have been decomposed by a fungus (C)
+0.3
+0.1
+0.2
-0.3
-0.2
sulfur source
sodium isethionate sulfur source
+0.3
+0.2
-0.2
-0.3
+0.1
stress
PM_argon75_N2O25 with buyrate and 0.1 mM Chloride; in dark
-0.2
+0.3
-0.1
-0.0
+0.3
stress
Benzoate (C), sodium fluoride stress
+0.1
+0.5
+0.0
+0.1
-0.4
carbon source dark aerobic
PM with succinate aerobic in dark
+0.2
+0.1
-0.1
-0.2
+0.4
stress
L-Lactate (C) with 10 mM Sodium Chloride
-0.2
-0.4
+0.2
+0.2
+0.7
carbon source dark aerobic
PM with butyrate aerobic in dark
+0.1
+0.3
-0.2
+0.1
+0.1
carbon source
PM with succinate anaerobic with light
+0.3
+0.3
+0.1
-0.1
+0.1
carbon source dark aerobic
PM with succinate aerobic in dark
+0.3
+0.3
-0.0
+0.2
+0.0
carbon source
MDC_bicarb with butyrate
+0.1
+0.5
-0.1
-0.0
+0.4
stress
PM_argon75_N2O25 butyrate and Chloride 0.1 mM
+0.1
+0.5
+0.0
-0.1
+0.3
carbon source dark aerobic
PM with succinate aerobic in dark
+0.1
+0.3
+0.0
+0.2
+0.3
carbon source dark aerobic
PM with succinate aerobic in dark
+0.2
+0.2
+0.0
+0.3
+0.3
carbon source
MDC_bicarb with butyrate and Adenine
-0.3
+0.4
+0.0
+0.3
+0.5
carbon source
PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM
+0.4
+0.3
+0.2
+0.0
+0.2
carbon source
PM with succinate and Sodium Formate anaerobic with light
+0.2
+0.3
+0.1
+0.3
+0.4
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
+0.4
+0.5
+0.1
-0.0
+0.2
carbon source dark aerobic
PM with succinate and Sodium Formate aerobic in dark
+0.6
+0.6
-0.0
+0.0
+0.3
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