Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_005955 and TX73_005960 are separated by 148 nucleotidesTX73_005960 and TX73_005965 are separated by 237 nucleotidesTX73_005965 and TX73_005970 are separated by 163 nucleotidesTX73_005970 and TX73_005975 overlap by 17 nucleotides TX73_005955: TX73_005955 - DUF2093 domain-containing protein, at 1,267,501 to 1,267,728 _005955 TX73_005960: TX73_005960 - exodeoxyribonuclease VII large subunit, at 1,267,877 to 1,269,490 _005960 TX73_005965: TX73_005965 - phosphoribosylamine--glycine ligase, at 1,269,728 to 1,271,011 _005965 TX73_005970: TX73_005970 - alpha/beta hydrolase, at 1,271,175 to 1,272,083 _005970 TX73_005975: TX73_005975 - nucleoside deaminase, at 1,272,067 to 1,272,513 _005975
Group Condition TX73_005955 TX73_005960 TX73_005965 TX73_005970 TX73_005975
carbon source 4-Hydroxybenzoate (C) -3.5 -0.5 N.D. -0.1 N.D.
sulfur source control Dimethyl sulfide sulfur source -1.2 -1.5 N.D. -0.0 N.D.
carbon source 4-Hydroxybenzoate (C) -1.7 -0.6 N.D. -0.1 N.D.
sulfur source sodium isethionate sulfur source -1.8 -0.7 N.D. +0.1 N.D.
stress L-Lactate (C) with 10 mM Sodium Chloride -1.2 -1.1 N.D. -0.0 N.D.
sulfur source Dimethylsulfoniopropionate sulfur source -1.4 -0.6 N.D. -0.1 N.D.
carbon source dark aerobic PM with succinate aerobic in dark -1.1 -0.9 N.D. -0.2 N.D.
carbon source aspen wood chips that have been decomposed by a fungus (C) -0.5 -1.4 N.D. -0.2 N.D.
sulfur source Taurine sulfur source -1.7 -0.4 N.D. -0.0 N.D.
stress Benzoate (C), sodium fluoride stress -0.8 -1.1 N.D. -0.1 N.D.
sulfur source Dimethylsulfoniopropionate sulfur source -1.1 -0.8 N.D. -0.1 N.D.
carbon source 4-Hydroxybenzoate (C) -1.4 -0.4 N.D. -0.1 N.D.
carbon source MDC_bicarb with butyrate and Adenine -0.4 -1.4 N.D. +0.0 N.D.
carbon source dark aerobic PM with succinate and Sodium Formate aerobic in dark -0.9 -0.9 N.D. +0.0 N.D.
stress Benzoate (C), sodium fluoride stress -0.6 -1.1 N.D. -0.0 N.D.
carbon source PM with argon and bicarbonate 20 mM and Sodium thiosulfate 50 mM -1.5 -0.2 N.D. -0.1 N.D.
sulfur source control sulfur source control -0.5 -0.9 N.D. -0.3 N.D.
stress L-Lactate (C) with 10 mM Sodium Chloride -0.3 -1.6 N.D. +0.1 N.D.
sulfur source 2-(Methylthio)ethanol sulfur source -0.2 -1.5 N.D. +0.0 N.D.
survival starvation expt 4; 3 days; outgrowth in CAAc -0.2 -1.3 N.D. +0.1 N.D.
stress PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark -1.3 +0.5 N.D. -0.1 N.D.
stress PM_N2O butyrate and nitrate 0.1 mM -1.6 +0.8 N.D. -0.0 N.D.
stress PM_N2O butyrate and nitrate 0.1 mM -1.2 +0.5 N.D. +0.0 N.D.
survival starvation expt 4; 7 days; outgrowth in CAAc +0.9 -0.9 N.D. -0.0 N.D.
survival starvation expt 2; 14 days; outgrowth in CAAc +1.6 -1.3 N.D. +0.1 N.D.
survival starvation expt 3; 14 days; outgrowth in CAAc +1.5 -1.4 N.D. +0.2 N.D.
carbon source Butyric Acid (C); anaerobic +1.1 -0.5 N.D. +0.2 N.D.
survival starvation expt 1; 14 days; outgrowth in CAAc +1.9 -0.8 N.D. +0.2 N.D.
survival starvation expt 4; 14 days; outgrowth in CAAc +1.9 -0.5 N.D. +0.1 N.D.
sulfur source NFM with pyruvate +0.8 +1.3 N.D. +0.0 N.D.
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