Fitness for 5 genes in Rhodopseudomonas palustris CGA009

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500 ntTX73_005660 and TX73_005665 are separated by 177 nucleotidesTX73_005665 and TX73_005670 are separated by 7 nucleotidesTX73_005670 and TX73_005675 are separated by 99 nucleotidesTX73_005675 and TX73_005680 are separated by 109 nucleotides TX73_005660: TX73_005660 - cytidine deaminase, at 1,205,973 to 1,206,398 _005660 TX73_005665: TX73_005665 - Holliday junction branch migration DNA helicase RuvB, at 1,206,576 to 1,207,625 _005665 TX73_005670: TX73_005670 - tol-pal system-associated acyl-CoA thioesterase, at 1,207,633 to 1,208,097 _005670 TX73_005675: TX73_005675 - NAD(P)/FAD-dependent oxidoreductase, at 1,208,197 to 1,209,507 _005675 TX73_005680: TX73_005680 - OpgC domain-containing protein, at 1,209,617 to 1,210,867 _005680
Group Condition TX73_005660 TX73_005665 TX73_005670 TX73_005675 TX73_005680
stress L-Lactate (C) with 10 mM Sodium Chloride -2.3 N.D. +0.6 -0.2 +0.3
carbon source dark aerobic PM with butyrate aerobic in dark -0.6 N.D. -0.5 -0.1 -0.5
sulfur source Thiamine HCl sulfur source -0.6 N.D. -0.0 -0.3 -0.1
stress Benzoate (C), sodium fluoride stress +0.2 N.D. -0.3 -0.9 +0.1
carbon source dark aerobic PM with succinate aerobic in dark -0.4 N.D. +0.0 -0.2 -0.2
sulfur source NFM with pyruvate +0.1 N.D. -0.6 -0.1 -0.2
carbon source PM with succinate anaerobic with light +0.1 N.D. -0.1 -0.6 -0.1
stress Benzoate (C), sodium fluoride stress +0.3 N.D. -0.1 -0.8 +0.1
carbon source PM with argon and bicarbonate 60 mM and Sodium thiosulfate 30 mM +0.4 N.D. -0.5 -0.2 -0.2
stress Benzoate (C), sodium fluoride stress +0.1 N.D. +0.1 -0.8 +0.1
carbon source 4-Hydroxybenzoate (C) +0.4 N.D. -0.7 -0.2 +0.0
stress PM_argon75_N2O25 butyrate and nitrate 0.1 mM -0.2 N.D. +0.2 -0.5 +0.1
sulfur source Thiamine HCl sulfur source -0.5 N.D. +0.3 -0.2 -0.1
stress PM_argon75_N2O25 butyrate and nitrate 0.1 mM -0.2 N.D. +0.3 -0.4 +0.1
stress PM_N2O butyrate and nitrate 0.1 mM -0.1 N.D. +0.4 -1.0 +0.6
stress PM_argon75_N2O25 butyrate and Chloride 0.1 mM -0.2 N.D. +0.3 -0.7 +0.5
stress PM_N2O butyrate and nitrate 0.1 mM +0.1 N.D. +0.3 -1.0 +0.6
stress PM_argon75_N2O25 butyrate and nitrate 0.1 mM -0.2 N.D. +0.5 -0.4 +0.2
survival starvation expt 4; 14 days; outgrowth in CAAc +0.5 N.D. -0.2 -0.0 -0.2
stress PM_N2O butyrate and nitrate 0.1 mM +0.0 N.D. +0.4 -0.9 +0.7
stress PM_argon75_N2O25 butyrate and Chloride 0.1 mM +0.3 N.D. +0.3 -1.0 +0.7
stress PM_N2O butyrate and nitrate 0.1 mM -0.0 N.D. +0.7 -1.1 +0.7
stress PM_N2O with buyrate and 0.1 mM bicarb and 0.1 mM nitrate; in dark -0.3 N.D. +0.2 +0.1 +0.2
stress PM_argon75_N2O25 butyrate and Chloride 0.1 mM -0.0 N.D. +0.5 -0.6 +0.5
stress PM_argon75_N2O25 butyrate and Chloride 0.1 mM -0.0 N.D. +0.4 -0.5 +0.5
carbon source acetate trihydrate and Sodium L-Lactate (C) -0.3 N.D. +0.6 +0.1 +0.2
sulfur source NFM with pyruvate +0.3 N.D. +0.5 +0.1 -0.2
carbon source MDC_bicarb with butyrate +0.3 N.D. +0.2 -0.1 +0.3
stress L-Lactate (C) with 10 mM Sodium Chloride -0.1 N.D. +1.0 -0.0 +0.1
carbon source MDC_bicarb with butyrate and Adenine +0.5 N.D. +0.5 -0.0 +0.1
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